Plant FIBer expression Database

Potri.005G203100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06510 249 / 2e-82 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031457
[exp]
214 / 4e-69 AT1G06510 192 / 5e-61 unknown protein
Lus10001505
[exp]
208 / 2e-66 AT1G06510 202 / 2e-64 unknown protein
Lus10031459
[exp]
149 / 9e-45 AT1G06510 148 / 9e-45 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G203100.11 pacid=42804241 polypeptide=Potri.005G203100.11.p locus=Potri.005G203100 ID=Potri.005G203100.11.v4.1 annot-version=v4.1
ATGATATGTCACAGTCACGGTGGTGGTGCCATGGTAGTGCTTTGCAGGCCTGTATTGAAGAGGCCTATGTGCTTGTCCTCCAACACGGACCAGCTTCGCA
CCCAACTCGATCAGCTTCATGCTGAGGCCGAAAGCACCAGAGCCAAAGCAAATAGTGCGAGATTGAGACTTATGAGATTATCAGAGGCAGCAGAGAAACT
AAAACGACAGGCTGCTGTTAGTGTTATTTCTGGAAAAGAAAATGATGCAAGAGAATTGCTTTTTCAAAAGAAGAAAGTTATGCATGCTATTGGAAGGTCA
AAAAACCGAATCGAGTTGCTTGATCAGCTCTCCTCTAAGCTTAATCAGGTAATTTCTGTAAAAGAAAACCAGCTAATAGGGAATGTGGCTTTCGATGTTG
AAGTTGAGACGAAAGATGATTCGAGTCCGGTTCGAATTGTATCTCCTAAGCTGGGAGTTACAGACTTCAGTTCTGATGATGACCTGGAATTTAGTGATGG
TCAAGACTTACAATTATGTGCCCATGGAGAAACAAACCCGCCGGTTGATGAGGAAGTGGGATTCCTCGGCAGGGACATTTGTAATGATTCTAATGAAGAG
AGCATAACCAGGGGTTTGAAGGATGTATCATCGTATGAGGACTTCTTGGAACATTTGGATGTGAAGCTTAATAAAATTGAATCAGAGCTTGTCACCATTT
TGAATGTCTCAGCCTTGGTACTGAATGATAATGAGAAACCTAATAATTTTAAAGTGCAGCAAACGATAGAGCTTCTTGAGAGTGTCCGTGCTATTCGGCA
GAAAATCTCAGGGATAATGCAGAAGAAGGTGGAGATCAGTTGA
AA sequence
>Potri.005G203100.11 pacid=42804241 polypeptide=Potri.005G203100.11.p locus=Potri.005G203100 ID=Potri.005G203100.11.v4.1 annot-version=v4.1
MICHSHGGGAMVVLCRPVLKRPMCLSSNTDQLRTQLDQLHAEAESTRAKANSARLRLMRLSEAAEKLKRQAAVSVISGKENDARELLFQKKKVMHAIGRS
KNRIELLDQLSSKLNQVISVKENQLIGNVAFDVEVETKDDSSPVRIVSPKLGVTDFSSDDDLEFSDGQDLQLCAHGETNPPVDEEVGFLGRDICNDSNEE
SITRGLKDVSSYEDFLEHLDVKLNKIESELVTILNVSALVLNDNEKPNNFKVQQTIELLESVRAIRQKISGIMQKKVEIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06510 unknown protein Potri.005G203100
[exp]
0 1
AT4G32551 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimeri... Potri.006G248100
[exp]
4.58 0.8866 LUG.1
AT5G50530 CBS / octicosapeptide/Phox/Bem... Potri.012G099600
[exp]
4.89 0.8852
AT3G53170 Tetratricopeptide repeat (TPR)... Potri.009G058300
[exp]
8.36 0.9011
Potri.018G138206
[exp]
8.48 0.9024
AT3G19740 P-loop containing nucleoside t... Potri.005G093300
[exp]
9.64 0.8822
AT1G71720 PDE338 PIGMENT DEFECTIVE 338, Nucleic... Potri.005G197900
[exp]
11.00 0.9213
AT1G79080 Pentatricopeptide repeat (PPR)... Potri.011G144300
[exp]
11.48 0.9042
AT1G31830 Amino acid permease family pro... Potri.003G103600
[exp]
13.19 0.8824
AT5G61490 Uncharacterised conserved prot... Potri.014G057200
[exp]
14.69 0.9106
AT4G14540 CCAAT NF-YB3 "nuclear factor Y, subunit B3"... Potri.001G367500
[exp]
16.37 0.8654

Potri.005G203100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.