Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59110 686 / 0 Protein kinase superfamily protein (.1) AT2G42960 667 / 0 Protein kinase superfamily protein (.1) AT1G56720 565 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09440 541 / 0 Protein kinase superfamily protein (.1) AT5G18500 538 / 0 Protein kinase superfamily protein (.1.2) AT3G17420 499 / 2e-174 GPK1 glyoxysomal protein kinase 1 (.1) AT4G01330 458 / 3e-158 Protein kinase superfamily protein (.1.2) AT4G02630 449 / 3e-154 Protein kinase superfamily protein (.1) AT1G01540 446 / 3e-153 Protein kinase superfamily protein (.1.2) AT4G34500 411 / 3e-140 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059000 [exp] 825 / 0 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 642 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 628 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 559 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G001600 [exp] 549 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 464 / 6e-160 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 440 / 6e-151 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G115600 [exp] 422 / 4e-144 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 420 / 5e-143 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001055 [exp] 732 / 0 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 730 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 680 / 0 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 679 / 0 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 557 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036863 [exp] 489 / 4e-170 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10041593 [exp] 452 / 3e-155 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 448 / 1e-153 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 444 / 5e-152 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 441 / 2e-151 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G203300.2 pacid=42802855 polypeptide=Potri.005G203300.2.p locus=Potri.005G203300 ID=Potri.005G203300.2.v4.1 annot-version=v4.1 ATGTCATCTGAGAGTTTAAATGCTGAATTATCAAAGAAGACATCAGTTTTGGGTTTGAAACTATGGGTTTTAATAGGAATATCTGTAGGAGTGTTTATAA TTTCGATTCTTTGTGTCTTATCTGTATGGATTACATTTCAGAGGAAATCTAGGAGATCAGTGGACAAATACTGCCATTCCAAAATACCAAATGTATCGAA AGATATTAAGATTGACAAGGTTGGGGTTCAAAATCCCATTCATCACCATGAAAGTGCATTTCTCACGATCAATGATAAATCGAGTGACAAGAATTCAGAT AAAATGCTAGCTCATTTGGGAATGAGCAAATCTAGTGATCCTGACATTGCCAGCCAAAGCAGCTCGATTTATCACAACGAGAGGGCCTGTAGTTCACATT CTGGGGAAGAAGGAAGCTCTGGGACTGTTCGGAAGCAATCTTCATTATCATATGCAGGACTTGTCACGGCCTCTCCCTTAATTGGCTTGCCAGAAATTTC ACACCTTGGATGGGGCCACTGGTTTACACTTAGGGATCTTGAGTTTGCTACAAATCGTTTTGCAGCAGAGAATGTGCTTGGTGAGGGTGGATATGGGGTT GTTTACAAGGGTAGACTAATAAATGGAACTGAGGTAGCGGTAAAGAAGCTTCTTAACAACCTGGGACAGGCAGAGAAGGAATTTAGGGTTGAAGTGGAGG CTATTGGTCATGTTCGACATAAGAATCTTGTACGGCTTCTTGGCTACTGCATCGAAGGAGTTCACAGGATGCTGGTGTATGAATATGTGAATAATGGGAA CTTAGAACAATGGCTGCATGGGGCAATGCAACATCATGGTATGCTTACTTGGGAGGCACGCATGAAGGTCCTTCTGGGTACTGCTAAGGCGCTTGCTTAT TTGCATGAAGCAATAGAACCAAAGGTTGTTCACCGAGACATAAAATCCAGCAATATTTTGATTGACAATGAGTTTAATGCCAAGGTCTCTGATTTTGGAT TGGCCAAGCTCCTTGATTCTGGAGAGAGTCATATCACTACAAGAGTTATGGGTACATTTGGTTATGTTGCACCAGAATATGCTAATACGGGCATGTTAAA TGAGAAGAGTGACATTTATAGCTTTGGAGTCCTGCTACTAGAATCAGTTACTGGAAGGGACCCTGTGGACCATGGCAGACCTGCTAACGAGGTTAATCTT GTTGAGTGGTTAAAAATGATGGTTGGGACAAGAAGATCTGAGGAAGTTGTGGATCCAAATCTTGAAGTTAAACCAACAACGCGTGCTTTAAAACGTGCTC TTTTGGTTGCACTTAGGTGTGTCGATCCTGATGCAGAAAAGAGACCTAGAATGACTCAAGTTGCAAGAATGCTTGAAGCTGATGAGTACCCTTCTCGTGA GGATCGGAGGAACAGAAAGAGTCGTACAACTAGCATGGAAATCGAATCCATGAAGGACTCAACAGAAACTGAAAACAAGGTAGTGGATCCAGAGAGCTGT TTATCTGAGACAACTAACGGATAG
AA sequence Show only first row Show all	>Potri.005G203300.2 pacid=42802855 polypeptide=Potri.005G203300.2.p locus=Potri.005G203300 ID=Potri.005G203300.2.v4.1 annot-version=v4.1 MSSESLNAELSKKTSVLGLKLWVLIGISVGVFIISILCVLSVWITFQRKSRRSVDKYCHSKIPNVSKDIKIDKVGVQNPIHHHESAFLTINDKSSDKNSD KMLAHLGMSKSSDPDIASQSSSIYHNERACSSHSGEEGSSGTVRKQSSLSYAGLVTASPLIGLPEISHLGWGHWFTLRDLEFATNRFAAENVLGEGGYGV VYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMQHHGMLTWEARMKVLLGTAKALAY LHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGMLNEKSDIYSFGVLLLESVTGRDPVDHGRPANEVNL VEWLKMMVGTRRSEEVVDPNLEVKPTTRALKRALLVALRCVDPDAEKRPRMTQVARMLEADEYPSREDRRNRKSRTTSMEIESMKDSTETENKVVDPESC LSETTNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	0	1
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	3.00	0.8642
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	3.16	0.8752
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	9.38	0.8464	Pt-PGP1.1
AT1G76660			unknown protein		Potri.002G001100 [exp]	10.48	0.8723
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	16.73	0.8362
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	16.97	0.8389
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	17.49	0.8576
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Potri.008G061000 [exp]	19.62	0.8524
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.001G402400 [exp]	19.79	0.8492	Pt-MLO11.1
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.016G117200 [exp]	24.33	0.8634	CPK13.2

Compare expression of checked genes

Potri.005G203300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.