Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06475 64 / 3e-15 unknown protein AT5G46295 49 / 1e-09 unknown protein AT5G49525 35 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G058400 [exp] 127 / 1e-40 AT1G06475 64 / 5e-15 unknown protein Potri.004G131200 [exp] 72 / 2e-18 AT5G46295 / unknown protein Potri.011G079900 [exp] 67 / 1e-16 AT5G46295 57 / 3e-12 unknown protein Potri.005G011400 [exp] 40 / 9e-06 AT5G49525 49 / 6e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025392 [exp] 72 / 5e-18 AT1G06475 59 / 1e-12 unknown protein Lus10015269 [exp] 72 / 7e-18 AT1G06475 59 / 1e-12 unknown protein Lus10020752 [exp] 61 / 1e-13 AT1G06475 51 / 2e-09 unknown protein Lus10007328 [exp] 54 / 4e-11 AT1G06475 51 / 3e-09 unknown protein Lus10004931 [exp] 54 / 5e-11 AT1G06475 47 / 7e-08 unknown protein Lus10011181 [exp] 41 / 4e-06 AT5G49525 50 / 5e-10 unknown protein Lus10015445 [exp] 37 / 7e-05 ND 49 / 2e-09
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G203800.2 pacid=42803484 polypeptide=Potri.005G203800.2.p locus=Potri.005G203800 ID=Potri.005G203800.2.v4.1 annot-version=v4.1 ATGGCGAAGAAGACATGGTCGTTGAAGAAGGTTATGATGAAGAAGGATCAGCTGTGGCCATGGAAAATCTCTGGCATCAAATGGAAACGTGGTCTTGATT TTCAGTTGAACATAATAGACAACTTGGTCTTCAAGGTTCTCTATGTAGCTGAAGCTGTTGTTCTTGTTTCCACTCTCTGCTTCTTCTATCTCTGCTGTGG CTGCCACATATGA
AA sequence Show only first row Show all	>Potri.005G203800.2 pacid=42803484 polypeptide=Potri.005G203800.2.p locus=Potri.005G203800 ID=Potri.005G203800.2.v4.1 annot-version=v4.1 MAKKTWSLKKVMMKKDQLWPWKISGIKWKRGLDFQLNIIDNLVFKVLYVAEAVVLVSTLCFFYLCCGCHI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06475			unknown protein		Potri.005G203800 [exp]	0	1
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.014G109100 [exp]	2.00	0.8515
AT1G06475			unknown protein		Potri.002G058400 [exp]	3.60	0.8746
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	6.70	0.8425	HFO909
AT3G25580			Thioredoxin superfamily protei...		Potri.001G297900 [exp]	12.32	0.8043
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	14.42	0.8366
AT4G15790			unknown protein		Potri.010G024600 [exp]	15.00	0.8165
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.004G172600 [exp]	15.87	0.7817	Pt-GRP2.3
AT3G56870			unknown protein		Potri.014G181200 [exp]	16.24	0.7969
AT5G40460			unknown protein		Potri.017G070000 [exp]	16.24	0.7652
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	18.49	0.8067

Compare expression of checked genes

Potri.005G203800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.