Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67930 1090 / 0 Golgi transport complex protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G058300 [exp] 1328 / 0 AT1G67930 1066 / 0.0 Golgi transport complex protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020754 [exp] 1021 / 0 AT1G67930 969 / 0.0 Golgi transport complex protein-related (.1) Lus10007330 [exp] 1020 / 0 AT1G67930 967 / 0.0 Golgi transport complex protein-related (.1) Lus10020753 [exp] 84 / 5e-07 AT1G67930 87 / 8e-20 Golgi transport complex protein-related (.1) Lus10007329 [exp] 0 / 1 AT1G67930 89 / 5e-36 Golgi transport complex protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF10392 [poplar] [flax] COG5 Golgi transport complex subunit 5
Representative CDS sequence Show only first row Show all	>Potri.005G203900.1 pacid=42805287 polypeptide=Potri.005G203900.1.p locus=Potri.005G203900 ID=Potri.005G203900.1.v4.1 annot-version=v4.1 ATGGCAACAGCAGCAGCAGCAGCGCAAAGATCTCAACTCCCCTCGATAAGCACAAACGCCTCTCCCTCTCCCTCCTCCTCTTCTCCTCTCCAACGCCTCT CCACTTTCAAAACCCCTTCTGCTTCTTCTCCTCCACCATCTTCAACCACCGCAACCTCTTCTGCTTCACCTCTAGACTCTTTCTCCAAAGACCCATTCCT CTCCCCATTCCTCTCTCCCTCCTTCTCTTCCACTTCCTTCTCCTCCGCCGCCCTCTCCTCTGGCTCCCCTGCCTCCACCGCCGAACACCTCCACCATGCA ATTCGCCTCCTCGAATCCCAACTCCGTTCCGAAGTCCTTTCCCGCCATCCCCACCTCTTCCACCAACTCTCGTCCATTAAAGAAGCTGAACTCTCCCTCT CCACCCTCCGATCGGCCATCTCTTCTATGCAGTCCTCTATTCGCCGCGTCAGATCCGAGCTTTCTGATCCCCATAACGCTATTAAATCAAAAACTATCCA GCTCTCCAATTTGCATCGTACCAACCAAGCATTACAACACACTATTCGCGCTCTGAGGTTGTCGAAAAAGCTTCGAGATTTAATTTCTGCATCAGAATCA GAGCCTGAAAAATTGGATCTTGCCAAGGCAGCGCAATTACATTACGAGATCTTGACAATGTGTAATGAGTATGATTTGAGAGGAATTGATATGGTTGACG AGGAGCTGAATTGGGTTAAAGAAATTGGGGAAAAACTGCGCAGCCAAGCCATGAAAGTGTTAGAGAGAGGAATGGAAGGATTGAATCAGGCAGAAGTAGG AACTGGGTTGCAAGTTTTCTATAATTTAGGAGAGCTGAAGGTGACTGTGGAGCAATTGGTGAATAAGTATAAGGGAATGGGAGTGAAGAGTGTGGGCTTG GCATTGGATATGAAGGCGATTTCTGCGAGTGGTGGTGGGTATGGGCCAGGAGGGATAAGAGGGAGTGGGACTCCACAGATTGGAGGAGGGGCAAAAGCAA GGGAGGCACTTTGGCAGAGAATGGGGAATTGTATGGATCGGTTGCATTCTATTGTTGTTGCTGTTTGGCATTTGCAGAGAGTGTTGTCCAAGAAGAGGGA TCCATTTACGCATGTTTTGTTGCTTGATGAGGTTATTAAGGATGGTGATCCCATGCTAACAGACCGGGTTTGGGAGGCACTTGTGAAGGCTTTTGCTAGC CAAATGAAATCTGCTTTCACTGCATCAAGTTTTGTTAAGGAGATATTTGCTATGGGCTATCCTAAACTCTTCTCCTTGACAGAGAATCTACTTGAAAGAA TCTCACATGATACAGATGTCAAAGGGGTTTTACCAGCTATTACTTTGGACGGAAAGGAACAGATGGTTGCTGCCATTGAAATATTCCAGACAGCTTTCTT GGCTATGTGCTTAAGTCGCCTTTCAGATCTTGTGAACACTGTTTTCCCGGTGTCCAGCCGTGGGAGTGTTCCTTCCAAAGAACAAATCTCAAGAATTATC TCCCGTATCGAGGAAGAGGTTGAAGCAGTCCAATTGGATGGGCGTTTGACTCTTCTTGTATTTCATGAAATAGGCAAGGTTTTGCTCCTGCTTTCAGAAC GAGTTGAATACCAGATATCTGCAGGTCATGAGGCACGCCAAATTACAGGTCCTGCAACTGCAGCACAAGTCAGGAACTTTGCTTTGTGCCAGCATTTACA AGAAATTCATACACGTATATCATCAATGATTGCTGGGCTGCCCACTATCGCAGTGGATGTGTTGTCTCCTGCACTGGGTGCAATATATGGGGTAGCTCGT GACTCAGTGACTCCCCTTTTCAAAGCAATGATTGACCGACTTGAGTCATGCATCCTGCAAATTCACGACCAGAACTTTGGTGCTCATGGTATGGATGCTG CAATGGACAACAATGCTTCACCTTACATGGAGGAGTTGCAGAAGTGCATTCTTCACTTTCGTACTGAGTTCTTGTCTAGGCTCTTACCTTCTTCAGCAAG TGCTACAACAGCTGGGACAGAAACTATATGCACCCAGCTTGTGAGAAGTATGGCATCACGGGTTTTGATATTCTTTATCAGACATGCCTCTCTTGTACGA CCTCTTTCAGAATCAGGGAAACTGAGGATGGCTAGAGATATGGCTGAGCTGGAATTAACTGTAGGCCAATATTTGTTTCCTGTACAACAACTTGGACCAC CGTACCGGGCACTCCGAGCGTTCCGGCCGCTTATTTTCCTGGAGACATCTCAGTTGGGAGCATCTCCTCTACTTCAAGATCTGCCACCAAGTGTCATACT CCACCACCTTTACACCCGAGGCCCTGATGAATTGGAATCACCACTGCAAAGGAACAGGCTTACACCTCTGCAGTATTCACTGTGGCTGGATTCTCAAGGG GAGGATCAGATTTGGAAAGGTATCAAAGCAACTTTAGATGATTATGCTGCAAAGGTTAGATCAAGAGGAGACAAGGAATTTAGCCCTGTATATCCTCTTA TGCATCATTTAGGGTCATTGTTGACAGAGAATGCCCCCGTGTCCCAAAGGCATTAA
AA sequence Show only first row Show all	>Potri.005G203900.1 pacid=42805287 polypeptide=Potri.005G203900.1.p locus=Potri.005G203900 ID=Potri.005G203900.1.v4.1 annot-version=v4.1 MATAAAAAQRSQLPSISTNASPSPSSSSPLQRLSTFKTPSASSPPPSSTTATSSASPLDSFSKDPFLSPFLSPSFSSTSFSSAALSSGSPASTAEHLHHA IRLLESQLRSEVLSRHPHLFHQLSSIKEAELSLSTLRSAISSMQSSIRRVRSELSDPHNAIKSKTIQLSNLHRTNQALQHTIRALRLSKKLRDLISASES EPEKLDLAKAAQLHYEILTMCNEYDLRGIDMVDEELNWVKEIGEKLRSQAMKVLERGMEGLNQAEVGTGLQVFYNLGELKVTVEQLVNKYKGMGVKSVGL ALDMKAISASGGGYGPGGIRGSGTPQIGGGAKAREALWQRMGNCMDRLHSIVVAVWHLQRVLSKKRDPFTHVLLLDEVIKDGDPMLTDRVWEALVKAFAS QMKSAFTASSFVKEIFAMGYPKLFSLTENLLERISHDTDVKGVLPAITLDGKEQMVAAIEIFQTAFLAMCLSRLSDLVNTVFPVSSRGSVPSKEQISRII SRIEEEVEAVQLDGRLTLLVFHEIGKVLLLLSERVEYQISAGHEARQITGPATAAQVRNFALCQHLQEIHTRISSMIAGLPTIAVDVLSPALGAIYGVAR DSVTPLFKAMIDRLESCILQIHDQNFGAHGMDAAMDNNASPYMEELQKCILHFRTEFLSRLLPSSASATTAGTETICTQLVRSMASRVLIFFIRHASLVR PLSESGKLRMARDMAELELTVGQYLFPVQQLGPPYRALRAFRPLIFLETSQLGASPLLQDLPPSVILHHLYTRGPDELESPLQRNRLTPLQYSLWLDSQG EDQIWKGIKATLDDYAAKVRSRGDKEFSPVYPLMHHLGSLLTENAPVSQRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Potri.009G019800 [exp]	1.73	0.7944
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	2.00	0.7947
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	3.46	0.7846
AT5G13890			Family of unknown function (DU...		Potri.002G237200 [exp]	3.74	0.7565
AT5G54830			DOMON domain-containing protei...		Potri.006G262300 [exp]	6.70	0.7466
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	8.00	0.7342	GN.2
AT4G10790			UBX domain-containing protein ...		Potri.003G145200 [exp]	8.77	0.7436
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	11.22	0.7282
AT3G07660			Kinase-related protein of unkn...		Potri.002G217000 [exp]	11.48	0.7211
AT1G11480			eukaryotic translation initiat...		Potri.017G041300 [exp]	16.03	0.7952

Compare expression of checked genes

Potri.005G203900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.