Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30890 228 / 6e-75 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G18260 228 / 2e-71 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G12980 60 / 3e-10 Auxin-responsive family protein (.1) AT3G25290 58 / 2e-09 Auxin-responsive family protein (.1.2) AT5G47530 54 / 3e-08 Auxin-responsive family protein (.1) AT4G17280 54 / 4e-08 Auxin-responsive family protein (.1) AT5G54830 54 / 4e-08 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) AT5G35735 51 / 3e-07 Auxin-responsive family protein (.1) AT2G04850 48 / 3e-06 Auxin-responsive family protein (.1) AT3G61750 46 / 1e-05 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057900 [exp] 343 / 2e-121 AT2G30890 189 / 1e-60 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.011G080400 [exp] 246 / 2e-81 AT4G18260 254 / 3e-81 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.002G222700 [exp] 63 / 3e-11 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 58 / 2e-09 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1) Potri.002G222600 [exp] 57 / 2e-09 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 57 / 3e-09 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 57 / 3e-09 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096600 [exp] 57 / 4e-09 AT5G47530 296 / 1e-97 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 56 / 6e-09 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007333 [exp] 305 / 5e-105 AT4G18260 204 / 2e-62 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10020757 [exp] 262 / 3e-89 AT4G18260 184 / 6e-56 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10002274 [exp] 56 / 6e-09 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10006398 [exp] 56 / 6e-09 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10012350 [exp] 54 / 4e-08 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10010498 [exp] 53 / 1e-07 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10038225 [exp] 50 / 3e-07 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10012625 [exp] 51 / 4e-07 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10025877 [exp] 50 / 4e-07 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10010120 [exp] 50 / 7e-07 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Potri.005G204300.1 pacid=42804488 polypeptide=Potri.005G204300.1.p locus=Potri.005G204300 ID=Potri.005G204300.1.v4.1 annot-version=v4.1 ATGCAACTTCTGCAGAAACTGGTTTCTTTCACCACCTGTGCGTATTTTGTTATTCTTCTTCTTCTACCATTTGTCAACTCAGCTCAAGAACAGTTGAAAA CCACAGGCACTCGTACTAACAACGAGAACATCATGGACAAGTTAAGTCCTAAACTGCTGTTTGAGATTACACTCCATGGATTTCTCCTGTGGGCCTCAAT GGGATTCCTAATGCCTGTTGGGATACTCGCTATCAGAATGTCACACAGAGAGGCATGCGGAAGAAGGCTTAAGATTCTTTTCTATGTTCATTCTATTTCA CAGATGCTTTCTGTACTTCTCTCCACAGCAGGAGCAGTAATGTCTATAAAAAACTTCAACAACTCATTCGACAATCACCATCAACGAATAGGCGTAGGCC TATATGGTATAGTATGGTTACAAGCCCTCACTGGGCTTCTACGACCGCGGCGAGGATCTAAAGGAAGAAGTTTGTGGTTTTTTGTGCACTGGATAACTGG AACTGCAGTATCTCTGCTGGGAATCATCAGCATATATACAGGATTACAAGCTTACCATCAGAAGACATCAAGAAGTATACATCTTTGGACTATAGTTTTC ACCACTGAGGTCTCTTTCATTATCTTCTTTTACCTGTTCCAGGACAAGTGGGTTTATATACAAAAGCAAGGAGTCATTTTGGGTGATGAACCAGTGAGGC CCACTCATCAAGTAATTTGTCCAGGTGAAAAGAAAAGGGAATCAGCAACCGAGTCTTGTTGA
AA sequence Show only first row Show all	>Potri.005G204300.1 pacid=42804488 polypeptide=Potri.005G204300.1.p locus=Potri.005G204300 ID=Potri.005G204300.1.v4.1 annot-version=v4.1 MQLLQKLVSFTTCAYFVILLLLPFVNSAQEQLKTTGTRTNNENIMDKLSPKLLFEITLHGFLLWASMGFLMPVGILAIRMSHREACGRRLKILFYVHSIS QMLSVLLSTAGAVMSIKNFNNSFDNHHQRIGVGLYGIVWLQALTGLLRPRRGSKGRSLWFFVHWITGTAVSLLGIISIYTGLQAYHQKTSRSIHLWTIVF TTEVSFIIFFYLFQDKWVYIQKQGVILGDEPVRPTHQVICPGEKKRESATESC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30890			Cytochrome b561/ferric reducta...		Potri.005G204300 [exp]	0	1
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.003G125400 [exp]	1.73	0.9374
AT3G05910			Pectinacetylesterase family pr...		Potri.013G000900 [exp]	6.92	0.9223
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	8.30	0.9157
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	9.79	0.9128
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.005G075900 [exp]	10.95	0.9101	ANN1.3
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	12.84	0.9108	PtrAUX8
AT3G42800			unknown protein		Potri.018G065000 [exp]	13.85	0.9084
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.014G075500 [exp]	14.49	0.8952	Pt-EMB78.1
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Potri.009G064300 [exp]	14.96	0.8949	Pt-DRT100.1
AT4G38650			Glycosyl hydrolase family 10 p...		Potri.004G173300 [exp]	15.49	0.8708

Compare expression of checked genes

Potri.005G204300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.