Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	VCL1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38020 1285 / 0 EMB258, MAN, VCL1 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057800 [exp] 1538 / 0 AT2G38020 1275 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011325 [exp] 1425 / 0 AT2G38020 1313 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2) Lus10012203 [exp] 1120 / 0 AT2G38020 1021 / 0.0 VACUOLELESS 1, MANGLED, vacuoleless1 (VCL1) (.1), vacuoleless1 (VCL1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04840 [poplar] [flax] Vps16_C Vps16, C-terminal region PF04841 [poplar] [flax] Vps16_N Vps16, N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.005G204400.1 pacid=42802728 polypeptide=Potri.005G204400.1.p locus=Potri.005G204400 ID=Potri.005G204400.1.v4.1 annot-version=v4.1 ATGGCAAACGTCTCCGTCGCGGCGGAATGGCAACTACTAATTAACCGATACTACCGAAAACCTGAACTCTACCCGATGCGATGGAAACACATAGACTTAA GCCGCAACAAGGTAGCCTGCGCTCCCTTCGGCGGTCCAATCGCTATAATCCGCGACGATTCCAAAATCGTCCAGCTGTATGCCGAATCCGCCCTCCGAAA ACTCCGAATTTTTAACTCCGCCGGTATCCTCCTCTCCGAAACCGTCTGGAAACACCCCGGAGGTCGATTGATCGGCATGTCATGGACCGAAGACCAAACC CTAATTTGCATAGTTCAGGACGGCACGATCTACCGTTACAACGTCCACTGCGAGGTTCTGGAACCTAATTTCTCTATGGGGAAGGAATGCTTTGAACAGA ATGTCGTGGATTGCGTGTTTTGGGGGAACGGTGTCGTGTGCTTGACGGAAGCTGGGAAGCTGTTCTGTGTTCCTGATTTTAAGCAGATTAAGCCCTGTAA GCTTGCAGAAGTAGGGATTGGAGCTGAGGAATTGCCACATTGTATGGCGGTTATTGAACCGCAGTATACTGTTTCGGGTAATGTGGAGGTCTTGTTAGGA GTAGGAAGTGGAATTGTGATTGTTGATGAGGATGAGGTGAGGTTTATTGACGAGGAAAAAATTGGTGGTGTTGTGCTGAAAATTGCTGTTTCCCACAACG GGAGATTTTTAGCGTGTTTTATGCATGATGGAAGACTTGTTGTTATGAATACAGAGTTTAGGGATTTTTTTCAGTATCAATGTGAGTCTGCTCTTCCACC AGAGCAGATGGCTTGGTGTGGATTAGATAGCGTGTTGCTTTATTGGGATGATGTGCTTTTGATGGTGGGACCTTCTGAGGATTCTGTATCATATATTTAC GATGAACCTGTGATTTTTATCCCTGAGTGTGATGGAGTGAGGATATTGTCAAATACGAGTATGGAGTTTGTACAAAGGGTGCCTGATTCTACTGTGTCTA TATTTAAGATAGGAAGCACGTCACCTGCATCATTGTTGTTTGATGCCTTGGATCATTTTGACAGGCGAAGCGCGAAGGCTGATGAGAATTTGAGATTGAT ACGAGCATCCTTGCCTGAGGCTGTTGAAGCATGTATTGATGCTGCTGGTCATGAATTTGATGTTTCCCGGCAGCGGATGCTGCTAAGAGCTGCAAGTTAT GGTCAAGCCTTTTGCAGCAATTTTCAACGTGACCACATTCAAGAGATGTGCAAAACTTTGCGGGTCTTAAACGCTGTACGCGATCCTGAGATTGGCATCC CTCTAAGTATTGAGCAGTATAAGTTGCTTTCGGCACCCATTCTGATTGGTCGTTTGATTAATGCTCACCAACATCTTCTTGCACTGCGGATATCAGAATA TGTTGGAATGAATCAAGAAGTAGTTATAATGCATTGGTCCTGCACAAAGATAACAGCTTCATTAGCAATTCCCGATGCAGCCCTCCTTGAAATCTTACTT GATAAGCTGAAATTATGCAAGGGAATATCCTATGCAGCTGTTGCTGCTCATGCAGATAGGAGTGGCCGCCGGAAGTTGGCTGCTATGCTTGTTGATCATG AACCACGCTCCTCAAAACAGGTTCCTTTATTGTTAAGTATAGCAGAGGAAGATACAGCTCTAATGAAGGCAACTGAAAGTGGTGACGCTGACCTTGTTTA CCTTGTCCTTTTTCATATCTGGCAAAAGAGGCCAGCCTTGGAGTTTTTTGGAACAATACAGGCCAGACCTCTGGCTCGTGATTTATTTACAGCTTATGCG CGGTGTTATAAACATGAATTCTTGAAAGACTTCTTCTTATCAACAGGACAACTTCAAGATGTGGCTTTTCTCCTATGGAAAGATTCGTGGGAACTAGGGA AAAATCCAATGGGCAGTAAAGGATCTCCACTTCACGGTCCACGCATAAAACTCATTGAAAAGGCCCACAATCTTTTTTCAGAGACCAAGGAACATACCTT TGAGTCGAAAGCTGCAGAAGAGCATGCAAAGCTACTGAGAATTCAACATGAGTTAGAAGTCTCTACAAAGCAGCCCATCTTTGTAGATTCAAGCATCAGT GATACAATTCGAACATGTATTGCTTTGGGAAATCATAGAGCTGCAATGAGAGTTAAAACAGAGTTTAAGGTTTCTGAGAAGAGATGGTATTGGCTTAAAG TTTTGGCTTTGGTAACCATTAGAGACTGGGAAGCCCTGGAAAAGTTTTCGAAGGAGAAGAGACCACCAATGGGTTTCAGGCCATTTGTGGAAGCATGCAT TGATGTGGATGAGAAAGCTGAAGCACTGAAATATATTCCAAAACTTGCAGATCCCAGAGAAAGAGCTGAGGCATATGCTCGGATTGGCATGGCAAAGGAA GCTGCTGATGCTGCTTCTCAGGCAAAAGATGGTGAATTGCTTGGTCGATTGAAATTGAGTTTTGCACAGAATACAGCAGCTTCATCAATATTTGACACCC TACGTGATCGTTTGTCCTTCCAAGGCGTCTCATAG
AA sequence Show only first row Show all	>Potri.005G204400.1 pacid=42802728 polypeptide=Potri.005G204400.1.p locus=Potri.005G204400 ID=Potri.005G204400.1.v4.1 annot-version=v4.1 MANVSVAAEWQLLINRYYRKPELYPMRWKHIDLSRNKVACAPFGGPIAIIRDDSKIVQLYAESALRKLRIFNSAGILLSETVWKHPGGRLIGMSWTEDQT LICIVQDGTIYRYNVHCEVLEPNFSMGKECFEQNVVDCVFWGNGVVCLTEAGKLFCVPDFKQIKPCKLAEVGIGAEELPHCMAVIEPQYTVSGNVEVLLG VGSGIVIVDEDEVRFIDEEKIGGVVLKIAVSHNGRFLACFMHDGRLVVMNTEFRDFFQYQCESALPPEQMAWCGLDSVLLYWDDVLLMVGPSEDSVSYIY DEPVIFIPECDGVRILSNTSMEFVQRVPDSTVSIFKIGSTSPASLLFDALDHFDRRSAKADENLRLIRASLPEAVEACIDAAGHEFDVSRQRMLLRAASY GQAFCSNFQRDHIQEMCKTLRVLNAVRDPEIGIPLSIEQYKLLSAPILIGRLINAHQHLLALRISEYVGMNQEVVIMHWSCTKITASLAIPDAALLEILL DKLKLCKGISYAAVAAHADRSGRRKLAAMLVDHEPRSSKQVPLLLSIAEEDTALMKATESGDADLVYLVLFHIWQKRPALEFFGTIQARPLARDLFTAYA RCYKHEFLKDFFLSTGQLQDVAFLLWKDSWELGKNPMGSKGSPLHGPRIKLIEKAHNLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQPIFVDSSIS DTIRTCIALGNHRAAMRVKTEFKVSEKRWYWLKVLALVTIRDWEALEKFSKEKRPPMGFRPFVEACIDVDEKAEALKYIPKLADPRERAEAYARIGMAKE AADAASQAKDGELLGRLKLSFAQNTAASSIFDTLRDRLSFQGVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.005G204400 [exp]	0	1	VCL1.4
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	12.20	0.8146
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	21.30	0.7738
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	22.97	0.7387
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.006G064300 [exp]	24.49	0.6951	Pt-SPS.1
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	35.69	0.7379
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	39.79	0.7200
AT2G20320			DENN (AEX-3) domain-containing...		Potri.002G255500 [exp]	66.40	0.7223
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	105.23	0.7007	Pt-ECA3.3
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	105.60	0.6840
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	116.52	0.6636

Compare expression of checked genes

Potri.005G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.