Plant FIBer expression Database

PEL1.2 (Potri.005G204500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PEL1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27650 635 / 0 PEL1 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
AT3G58390 575 / 0 Eukaryotic release factor 1 (eRF1) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G092600
[exp]
474 / 6e-168 AT4G27650 411 / 2e-143 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009553
[exp]
659 / 0 AT4G27650 635 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
Lus10020376
[exp]
630 / 0 AT4G27650 611 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0267 S11_L18p PF03463 eRF1_1 eRF1 domain 1
CL0267 S11_L18p PF03464 eRF1_2 eRF1 domain 2
CL0101 PELOTA PF03465 eRF1_3 eRF1 domain 3
Representative CDS sequence
>Potri.005G204500.3 pacid=42805169 polypeptide=Potri.005G204500.3.p locus=Potri.005G204500 ID=Potri.005G204500.3.v4.1 annot-version=v4.1
ATGAAGATCAATAGAAGAGATCTTGTACCAGACGGACCTGGTAGCGTCAAGATGACGCCGGTTGATGCAGATGATCTTTGGTTTGTCTACAATTTGATAG
CTCATGGAGATTCTGTTATGGCTGTTACTGTCAGGAAAGTTTTGAGAGAGACGTCTACCGGAAGAGATGCGGAGCGTGTTAAGCTTAAGTTAGAAATCAA
AGTTGAGGCTATAGAATATGATAAAGTAGGGTCTGTTTTGCGAATTCGTGGAAAGAATGTATTAGAGAACGAATATGTGAAGATTGGAGCATTTCATACA
CTAGAAATTGAGCTGCATCGACCTTTTGTATTGAGAAAGGAACTTTGGGACTCGATGGCATTGCATGTACTCAATCAGGCTTCTGATCCTGCTGCAAGTG
CTGATCTTGCTGTGGTTTTAATGCAAGAAGGATTAGCACATATCCTGCTTGTTGGTAGAAGTTTAACTACTACTCGTGCGAAGATAGAAACTTCAATTCC
TCGAAAACATGGGCCTGCAATAGCTGGTTATCAGACGGCATTAAATAAGTTCTTTGAGCATTTATTACAGGCTTTTCTGAAACATGTTGATTTTAATGTG
GTTCGGTGTGCGGTGATTGCAAGTCCTGGTTTCACAAAGGACCAGTTTCATCGTCACTTGTTGTTGGAGGCAGAGAGGAGACAGCTGAGGCCTATCATTG
AGAACAAGTCACGCATAGTTCTTGTGCATACAAGCTCAGGATACAAGCATAGTTTGAAAGAGGTTCTAGATGCTCCAAATGTTATGAATATGATAAAAGA
CACTAAAGCAGCACAAGAGGTCCGAGTTCTGAAGGATTTCTTTGACATGCTTTCAAATGATCCAGATCGAGCGTGCTATGGACCAAAGCACGTGGAGGTT
GCTCATGAACGCATGGCAGTGCAAACTCTACTCATCACAGATGAGTTATTCAGGAATGCTGATATACCAATGAGAAAAAAGTACGTCAACCTAGTCAACT
CAGTGAAGGGTTCAGGTGGCACTGTTCATATATTTTCATCAATGCATGCATCAGGAGAGCAATTGGCTCAGTTGACTGGCGTTGCTGCAATTCTGCGATT
TCCTCTACCGGAGCTGGAGGACATTGAGATGTGA
AA sequence
>Potri.005G204500.3 pacid=42805169 polypeptide=Potri.005G204500.3.p locus=Potri.005G204500 ID=Potri.005G204500.3.v4.1 annot-version=v4.1
MKINRRDLVPDGPGSVKMTPVDADDLWFVYNLIAHGDSVMAVTVRKVLRETSTGRDAERVKLKLEIKVEAIEYDKVGSVLRIRGKNVLENEYVKIGAFHT
LEIELHRPFVLRKELWDSMALHVLNQASDPAASADLAVVLMQEGLAHILLVGRSLTTTRAKIETSIPRKHGPAIAGYQTALNKFFEHLLQAFLKHVDFNV
VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIVLVHTSSGYKHSLKEVLDAPNVMNMIKDTKAAQEVRVLKDFFDMLSNDPDRACYGPKHVEV
AHERMAVQTLLITDELFRNADIPMRKKYVNLVNSVKGSGGTVHIFSSMHASGEQLAQLTGVAAILRFPLPELEDIEM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.005G204500
[exp]
0 1 PEL1.2
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.011G071900
[exp]
1.73 0.8113
AT2G44140 Peptidase family C54 protein (... Potri.007G147100
[exp]
3.16 0.7930
AT3G14430 unknown protein Potri.014G105250
[exp]
4.12 0.7228
AT2G25740 ATP-dependent protease La (LON... Potri.018G046700
[exp]
4.89 0.7348
AT1G53910 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) Potri.001G163700
[exp]
6.00 0.7220 Pt-ERF1.3
AT3G45600 TET3 tetraspanin3 (.1) Potri.009G015100
[exp]
7.48 0.7587
AT2G36310 NSH1, URH1 nucleoside hydrolase 1, uridin... Potri.006G083400
[exp]
9.38 0.7384
AT4G38630 ATMCB1, MBP1, A... MULTIUBIQUITIN-CHAIN-BINDING P... Potri.007G056200
[exp]
13.07 0.7803
AT5G05610 Alfin AL1 alfin-like 1 (.1.2) Potri.006G100900
[exp]
13.26 0.6898
AT5G51140 Pseudouridine synthase family ... Potri.015G101300
[exp]
13.78 0.7684

Potri.005G204500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.