Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59080 686 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 617 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G01300 258 / 2e-79 Eukaryotic aspartyl protease family protein (.1) AT1G25510 257 / 3e-79 Eukaryotic aspartyl protease family protein (.1) AT3G25700 243 / 6e-74 Eukaryotic aspartyl protease family protein (.1.2) AT3G61820 239 / 4e-72 Eukaryotic aspartyl protease family protein (.1) AT3G18490 230 / 1e-68 Eukaryotic aspartyl protease family protein (.1) AT2G03200 213 / 2e-62 Eukaryotic aspartyl protease family protein (.1) AT3G20015 210 / 1e-61 Eukaryotic aspartyl protease family protein (.1) AT5G10770 207 / 2e-60 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171700 [exp] 267 / 8e-83 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 262 / 5e-81 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 261 / 8e-81 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 256 / 2e-78 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 220 / 7e-65 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 218 / 2e-64 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G106300 [exp] 216 / 2e-63 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 212 / 3e-62 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 209 / 4e-61 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007335 [exp] 743 / 0 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020759 [exp] 395 / 4e-136 AT3G59080 386 / 1e-133 Eukaryotic aspartyl protease family protein (.1.2) Lus10003999 [exp] 274 / 2e-85 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 211 / 1e-61 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 208 / 5e-61 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 212 / 2e-60 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 204 / 6e-59 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 203 / 8e-59 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10030246 [exp] 199 / 4e-58 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 186 / 2e-52 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.005G204600.1 pacid=42805111 polypeptide=Potri.005G204600.1.p locus=Potri.005G204600 ID=Potri.005G204600.1.v4.1 annot-version=v4.1 ATGTTGTCCAGGTCTTTTATTGTTCTTCTTCTTTTTTTACTCTTCTCTGGTGCTTTTGAAGCTATCGCCGGAATCCATGACCATGGAAAGAATGTTAAAT CCAACATCTCTACTCTTGCCGGCATCGAATTGCCTGATCATATGAGCTTCAATGCAGTTTCTTCTTCAACAACAAACACAGGTTGTAACCTGGATACTTC AAAGAAAGTCAAACAATCACAGACAATAGTCTCAAAAGAAGATTTTGATCTTCTTGAAGATGATGACGACGACGATGAAGGAGGGGAAGAGGAAAAGGAG GCTAAACAGACGGTCAAACTCCACTTGAAGCACAGGTCAAAGGATAGAAAATCTGAGGGCAAAGAATCTTTCGTGGAATCCACAAACCGGGACTTGGCTA GAATTCAGACTCTCCACACAAGGATCATTGAGAAGAAGAATCAAAATGACATTTCCAGGCTAAAAAAAGATAAGGAGCGGCCGGAAAAGCAAATCAAGAC GGTGGTTGCAACGGCAGCATCGCCTGAATCTTACGGAACTGGGCTTTCCGGGCAGCTCATGGCGACTTTGGAGTCAGGGGTGACCCTTGGCTCTGGAGAG TATTTCATGGATGTGTTTATCGGTACCCCTCCTAAACACTACTCTTTGATTCTTGATACTGGTAGTGACCTTAATTGGATTCAATGCGTTCCTTGTCATG ATTGTTTTGAGCAAAATGGACCTTATTACGATCCTAAGGAGTCTAGTTCCTTTAGGAATATAGGTTGCCATGATCCTCGGTGTCATTTGGTTTCTTCTCC TGATCCTCCTCTGCCTTGCAAGGCTGAAAATCAGACATGCCCTTATTTCTATTGGTACGGTGATAGCTCTAATACAACCGGTGATTTTGCAACTGAAACA TTCACGGTTAATCTCACATCGCCTACCGGGAAGTCAGAATTTAAGAGAGTGGAGAATGTTATGTTTGGTTGTGGTCATTGGAATAGAGGCTTGTTCCATG GGGCCTCAGGATTGTTAGGACTTGGGAGAGGGCCTCTTTCATTCTCCTCCCAGCTTCAGTCTCTATATGGTCACTCGTTTTCGTATTGCCTGGTTGACAG AAATAGTGACACTAATGTTAGCAGCAAGTTGATTTTTGGCGAGGATAAGGACCTCTTGAATCACCCAGAATTGAATTTTACTACATTGGTTGGGGGCAAA GAAAATCCAGTAGACACATTTTATTACGTTCAAATAAAATCGATCATGGTCGGAGGAGAAGTGCTGAACATCCCAGAGAGCACTTGGAATATGACCTCGG ATGGTGTTGGGGGTACAATTGTGGATTCCGGCACCACACTTAGTTATTTCACAGAACCAGCCTATCAGATTATAAAGGATGCATTTGCTAAGAAGGTGAA GGGCTATCCAATTGTACAAGATTTTCCAATTTTGGATCCTTGCTACAATGTCTCTGGTGTTGAGAAAATAGACTTGCCCGATTTCGGCATTCTGTTTGCT GATGGCGCAGTCTGGAATTTCCCCGTCGAGAACTACTTCATCCGGCTTGATCCAGAGGAAGTTGTTTGCCTGGCAATTTTGGGGACTCCTCGATCCGCTC TTTCAATAATTGGCAACTATCAGCAGCAAAATTTCCACGTTTTGTATGACACCAAGAAGTCTAGGCTGGGGTATGCACCAATGAACTGTGCAGATGTATG A
AA sequence Show only first row Show all	>Potri.005G204600.1 pacid=42805111 polypeptide=Potri.005G204600.1.p locus=Potri.005G204600 ID=Potri.005G204600.1.v4.1 annot-version=v4.1 MLSRSFIVLLLFLLFSGAFEAIAGIHDHGKNVKSNISTLAGIELPDHMSFNAVSSSTTNTGCNLDTSKKVKQSQTIVSKEDFDLLEDDDDDDEGGEEEKE AKQTVKLHLKHRSKDRKSEGKESFVESTNRDLARIQTLHTRIIEKKNQNDISRLKKDKERPEKQIKTVVATAASPESYGTGLSGQLMATLESGVTLGSGE YFMDVFIGTPPKHYSLILDTGSDLNWIQCVPCHDCFEQNGPYYDPKESSSFRNIGCHDPRCHLVSSPDPPLPCKAENQTCPYFYWYGDSSNTTGDFATET FTVNLTSPTGKSEFKRVENVMFGCGHWNRGLFHGASGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPELNFTTLVGGK ENPVDTFYYVQIKSIMVGGEVLNIPESTWNMTSDGVGGTIVDSGTTLSYFTEPAYQIIKDAFAKKVKGYPIVQDFPILDPCYNVSGVEKIDLPDFGILFA DGAVWNFPVENYFIRLDPEEVVCLAILGTPRSALSIIGNYQQQNFHVLYDTKKSRLGYAPMNCADV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59080			Eukaryotic aspartyl protease f...		Potri.005G204600 [exp]	0	1
AT5G37490			ARM repeat superfamily protein...		Potri.008G137700 [exp]	4.35	0.8422
AT2G23770			protein kinase family protein ...		Potri.014G040000 [exp]	6.48	0.7955
AT5G37490			ARM repeat superfamily protein...		Potri.010G103100 [exp]	7.74	0.8340
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.010G147700 [exp]	12.32	0.8235
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	12.72	0.8320
AT3G11320			Nucleotide-sugar transporter f...		Potri.010G194100 [exp]	13.26	0.7483
AT1G06135			unknown protein		Potri.013G043600 [exp]	14.07	0.8048
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.009G167400 [exp]	15.74	0.8129
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.010G123700 [exp]	23.23	0.8194
AT1G68710			ATPase E1-E2 type family prote...		Potri.008G111200 [exp]	23.87	0.7636

Compare expression of checked genes

Potri.005G204600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.