Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53580 395 / 3e-139 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) AT3G10850 74 / 3e-15 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT2G31350 60 / 4e-10 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 56 / 1e-08 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 52 / 2e-07 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380100 [exp] 410 / 2e-145 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.019G062600 [exp] 82 / 3e-18 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.017G026500 [exp] 61 / 3e-10 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 52 / 1e-07 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020760 [exp] 411 / 1e-145 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 362 / 5e-126 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10034259 [exp] 78 / 2e-16 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029086 [exp] 76 / 8e-16 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 68 / 4e-13 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10039860 [exp] 62 / 9e-11 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10017706 [exp] 62 / 1e-10 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 50 / 7e-07 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF00753 [poplar] [flax] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G204800.2 pacid=42805612 polypeptide=Potri.005G204800.2.p locus=Potri.005G204800 ID=Potri.005G204800.2.v4.1 annot-version=v4.1 ATGCTTCGAATATATGCACTTCGACTCCCTCTCTCCAATCTCTCATTATTCTCTTCACATTCCCAAAAACCCAGACTCAACAACAACTATCGCACAATGA TGAATTACACAAAGGCAGCGTCGTCTCAGGCCTTCAAGAACAAGAAGCTCTTGTTTCGCCAGCTTTTCGAGAAGGATTCCTCTACTTACACCTATTTGTT GGCTGATGTTGCTCATCCTGAAAAACCTGCTCTGTTAATTGACCCAGTTGATAAGACAGTAGACAGGGACCTTTCCCTTGTAAAAGAGCTGGGGTTGAAG TTAATTTATGCTATAAACACCCATGTTCATGCTGATCATGTGACTGGAACTGGCTTGATTAAGACTAAGGTTCCTTCTGTGAAATCTATTATTTCGAAAG CAAGCAAATCGAAAGCTGATCTTCTCATTGAAGCTGGCGATAAAATTCATTTTGGGGATCTTTTTCTAGAGGTTCGAGCTACTCCGGGTCATACACTGGG TTGTGTCACATATGTTACTGGAGATGGGTCAGATCAGCCTCAACCAAGGATGGCTTTCACCGGAGATGCATTGCTAATTCGTGGATGTGGAAGAACTGAT TTTCAGGGTGGAAGTGCACATCAACTCTACCAGTCAGTACATTCACAGATATTTTCATTGCCCAAGGAAACCTTGATATATCCTGCTCATGATTACCGGG GATTCACTGTCAGCACTGTTGGGGAGGAAATGCAATATAATCCCAGACTGACCAAAGATGAGGAAATGTTCAAGAGTATCATGGAAAATCTGAATCTTCC ATATCCAAAGATGATTGACATAGCTGTTCCTTCAAATATGGTCTGCGGGCTGCAAGATCTGTCTGTGAAGCCTGTTGATGCCTCGTCAAACTAG
AA sequence Show only first row Show all	>Potri.005G204800.2 pacid=42805612 polypeptide=Potri.005G204800.2.p locus=Potri.005G204800 ID=Potri.005G204800.2.v4.1 annot-version=v4.1 MLRIYALRLPLSNLSLFSSHSQKPRLNNNYRTMMNYTKAASSQAFKNKKLLFRQLFEKDSSTYTYLLADVAHPEKPALLIDPVDKTVDRDLSLVKELGLK LIYAINTHVHADHVTGTGLIKTKVPSVKSIISKASKSKADLLIEAGDKIHFGDLFLEVRATPGHTLGCVTYVTGDGSDQPQPRMAFTGDALLIRGCGRTD FQGGSAHQLYQSVHSQIFSLPKETLIYPAHDYRGFTVSTVGEEMQYNPRLTKDEEMFKSIMENLNLPYPKMIDIAVPSNMVCGLQDLSVKPVDASSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	0	1
AT1G44960			SNARE associated Golgi protein...		Potri.003G159901 [exp]	1.73	0.8397
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104200 [exp]	2.00	0.8343
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	3.46	0.8489	Pt-ATPDAT.2
AT3G12300			unknown protein		Potri.003G193900 [exp]	3.60	0.8053
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	3.74	0.8653	Pt-LEN1.1
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.003G120800 [exp]	3.74	0.8251
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.001G154600 [exp]	10.00	0.7742
AT1G48040			Protein phosphatase 2C family ...		Potri.008G100700 [exp]	10.48	0.8305
AT2G47710			Adenine nucleotide alpha hydro...		Potri.014G130100 [exp]	12.64	0.7964
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.003G063100 [exp]	13.07	0.7981	Pt-ATPDAT.1

Compare expression of checked genes

Potri.005G204800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.