Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42990 493 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 437 / 1e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 422 / 1e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G58725 276 / 2e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 276 / 2e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 273 / 5e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 270 / 4e-88 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G42170 270 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75900 268 / 3e-87 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 267 / 6e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219700 [exp] 471 / 7e-167 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 470 / 1e-166 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 437 / 2e-153 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 300 / 7e-100 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.001G191400 [exp] 287 / 1e-94 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 284 / 3e-93 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 280 / 3e-91 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 278 / 4e-91 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 277 / 2e-90 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029958 [exp] 468 / 1e-165 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015162 [exp] 429 / 2e-150 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031520 [exp] 426 / 5e-148 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 289 / 3e-95 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 288 / 8e-95 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026406 [exp] 277 / 8e-90 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 274 / 2e-89 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 274 / 2e-89 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 270 / 9e-88 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 269 / 2e-87 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G205100.2 pacid=42802887 polypeptide=Potri.005G205100.2.p locus=Potri.005G205100 ID=Potri.005G205100.2.v4.1 annot-version=v4.1 ATGTTTTGGGTCGCATATCACTTGCTATATTATATCTGGAGTGCTAGAATTTTTGTTGCCTTCTTACTTCTTATCCACAGCATATTAGAGGTGGCTAAAT CACTGGTGACTTGTAGAAAATTCTCAATATGTGGATGCAGCTGTGCCGTTTGCATGCCAAGTTGCCTCAACAGAAAGTCCGGTGACAACGCAAAAGTTCC AGCCATCATAGTGTTCGGGGACTCATCTGTGGATTCAGGGAACAACAATTTTATTTCCACAATTGCGAAGAGCAATTTTGCACCTTACGGCCGTGATTTT CCAGGGGGTAGTGCCACTGGACGATTCTGCAATGGCCGCCTTCCTCCTGACTTCCTCTCTCAGGCTTTTGGCCTCAAGCCAGCTATACCTGCCTATTTGG ATCCAATGTATAACATACTAGATTTGGCTACTGGTGTTTGCTTTGCTTCTGCTGGAAGTGGCTATGACAATGCCACTGCTGATGTGCTAGGAGTGATCCC TTTATGGCAAGAGCTGGAGAACTACAAGGACTATCAAAGGAGAATGAAAGCCTATCTTGGTGCCAAGAAAGCGAAGGAAATAATAACAGAGGCTTTATAT ATAATGAGCTTAGGAACAAATGACTTCTTGGAAAACTACTACACCATCCCTGGCCGAAGATCACAATTCACGATCCAGCAATACCAGGATTTCCTCATCG GACTTGCTGAGGACTTTGTAAAGAAACTTTATGCTCTTGGAGCTCGGAAATTATCCCTTACAGGGCTTTCTCCAATGGGGTGTTTGCCACTGGAGAGAGC TACAAATTTTATGCATCCTAACAGCTGTGTGAAGGAATACAACGATCTTGCTTTAGAATTTAATGGAAAATTGAATCAATTGGTGGCAAAACTGAACGAT GAACTTCCTGGAATGAAAGTGTTGTTTGCAAATCCATACGACTTACTGTTGCAACTCATCACAGCACCCTCACAGTACGGATTTGAGAATGCAGAAGTAG GATGTTGTGGCTCAGGAACATTTGAGATGGGAATTATTTGTAATCGAGACCATCCACTTACATGCACAGATGCCGACAAATATGTATTTTGGGACGCCTT TCATCTCACTGACAGAACAAATCAAATAATTTCGGCTTATTTATTCAAGGATCTTAAGTCAAAATTTCTTTGA
AA sequence Show only first row Show all	>Potri.005G205100.2 pacid=42802887 polypeptide=Potri.005G205100.2.p locus=Potri.005G205100 ID=Potri.005G205100.2.v4.1 annot-version=v4.1 MFWVAYHLLYYIWSARIFVAFLLLIHSILEVAKSLVTCRKFSICGCSCAVCMPSCLNRKSGDNAKVPAIIVFGDSSVDSGNNNFISTIAKSNFAPYGRDF PGGSATGRFCNGRLPPDFLSQAFGLKPAIPAYLDPMYNILDLATGVCFASAGSGYDNATADVLGVIPLWQELENYKDYQRRMKAYLGAKKAKEIITEALY IMSLGTNDFLENYYTIPGRRSQFTIQQYQDFLIGLAEDFVKKLYALGARKLSLTGLSPMGCLPLERATNFMHPNSCVKEYNDLALEFNGKLNQLVAKLND ELPGMKVLFANPYDLLLQLITAPSQYGFENAEVGCCGSGTFEMGIICNRDHPLTCTDADKYVFWDAFHLTDRTNQIISAYLFKDLKSKFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.005G205100 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Potri.001G255100 [exp]	14.59	0.9636	Pt-GNS1.4
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.011G031800 [exp]	20.44	0.9630
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095300 [exp]	26.32	0.9596
AT1G29640			Protein of unknown function, D...		Potri.011G076900 [exp]	27.78	0.9580
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	30.69	0.9544
					Potri.001G248708 [exp]	30.80	0.9510
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	33.10	0.9537	Pt-GAS1.1
AT1G52565			unknown protein		Potri.001G192800 [exp]	34.05	0.9569
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	41.83	0.9538
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.006G055600 [exp]	47.71	0.9535	Pt-ZOG1.15

Compare expression of checked genes

Potri.005G205100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.