Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06570 436 / 6e-152 HPPD, HPD, PDS1 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057400 [exp] 548 / 0 AT1G06570 646 / 0.0 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020740 [exp] 471 / 6e-166 AT1G06570 659 / 0.0 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2) Lus10029820 [exp] 432 / 1e-151 AT1G06570 520 / 0.0 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G205200.3 pacid=42805324 polypeptide=Potri.005G205200.3.p locus=Potri.005G205200 ID=Potri.005G205200.3.v4.1 annot-version=v4.1 ATGGGCAAAGAAAATGAGACATCAGAGACACCAGGTGACTTCAAGCTAGTCGGTTTCTCCAACTTTGTTAGAACCAACTCACGGTCCGACCTTTTTAAAG TGAACCGTTTCCACCACGTAGAATTCTGGTGCTCGGACGCAACAAACACGGCACGCCCTTCCATGGACGTCAACCTCTCCCACACCGCTACCGCCTCCAT CCCCACCTTCAACCACGAAACCTGCCGCAACTTCTCCGCCAAACACGGCCTCGCAGTCCGCGCCATCGCCATCGAAGTTGACGACGCCGAGCTAGCCTTC ACCACCAGCGTGGCACACGGCGCCAAGCCGTCAGCCTCTCCAATCCTCCTTGATAATGGTGCCGTTATCACCGAGAGATACGTAAGCTACAGCAATTCTG AAAACGACGATTCTAGCCCTGACAATTGGTTTTTGCCTAAATTCGAGGCAGTGTCATCGTTTCCTTTGGACTACGGGATCAGGAGATTAGACCATGCGGT TGGAAACGAGTTCACTGGTTTTCATGAATTTGCGGATTTCACGGCGGAGGATGTTGGGACGAGCGAGAGTGGGTTGAATGCGGTTGTTTTGGCTAATAAC GAAGAGACAGTGCTGTTGCCAATGAACGAGCCGGTTTTTGGGACTAAAAGGAAGAGTCAGATACAGACTTATTTGGAGCACAATGAAGGGGCTGGAGTGC AACATTTGCCGCTTGTGAGTGAGGATATTTTCAGGACTTTGAGGGAGATGAGGAAGTGCAGTGCAGTTGAGGGATTTGAGTTTATGCCTTCGCCACCGCC CACTTATTATGAGAACTTGAAGAATGATCAAGGGACTTTGCTTCAGATTTTCACCAAGCCTGTTGGTGATAGGCCAACAATCTTTATAGAGATAATTCAG AGAGTGGGGTGCATGCTCAAGGATGAGAAGGGCAGGGAATACCAGAAGAGTGGATGTGGAGGATTCGGGAAAGGAAATTTTTCAGAGCTCTTTAAGTCGA TTGAGGAATATGAAAAGACACTTGAAGCCAAAAGAATTTCAGAAACAACTTCAGCATGA
AA sequence Show only first row Show all	>Potri.005G205200.3 pacid=42805324 polypeptide=Potri.005G205200.3.p locus=Potri.005G205200 ID=Potri.005G205200.3.v4.1 annot-version=v4.1 MGKENETSETPGDFKLVGFSNFVRTNSRSDLFKVNRFHHVEFWCSDATNTARPSMDVNLSHTATASIPTFNHETCRNFSAKHGLAVRAIAIEVDDAELAF TTSVAHGAKPSASPILLDNGAVITERYVSYSNSENDDSSPDNWFLPKFEAVSSFPLDYGIRRLDHAVGNEFTGFHEFADFTAEDVGTSESGLNAVVLANN EETVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLPLVSEDIFRTLREMRKCSAVEGFEFMPSPPPTYYENLKNDQGTLLQIFTKPVGDRPTIFIEIIQ RVGCMLKDEKGREYQKSGCGGFGKGNFSELFKSIEEYEKTLEAKRISETTSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	0	1
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.003G002500 [exp]	3.87	0.8519
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	4.79	0.8696
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	8.36	0.8448
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Potri.013G000300 [exp]	8.94	0.8381	PHYC.1,phya
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385500 [exp]	11.31	0.8396
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	14.83	0.8365
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.009G113045 [exp]	16.00	0.8169
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	20.04	0.8454
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G047900 [exp]	20.39	0.8038
AT5G56260			Ribonuclease E inhibitor RraA/...		Potri.011G169700 [exp]	20.90	0.8056

Compare expression of checked genes

Potri.005G205200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.