Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30880 558 / 0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057300 [exp] 788 / 0 AT2G30880 573 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2) Potri.003G001400 [exp] 45 / 0.0001 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Potri.004G228400 [exp] 42 / 0.001 AT1G59610 1301 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020739 [exp] 632 / 0 AT2G30880 620 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2) Lus10029819 [exp] 613 / 0 AT2G30880 607 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain
Representative CDS sequence Show only first row Show all	>Potri.005G205300.1 pacid=42802431 polypeptide=Potri.005G205300.1.p locus=Potri.005G205300 ID=Potri.005G205300.1.v4.1 annot-version=v4.1 ATGGCCTCCAACGGAGCTTCTACGCAGCAACAGAGACCTGCAGTGGGCACAGAGAATAGTTTGGAGAAGATCAAGCGGCAATTAGCGTCCGGCTCTGGTA GGAACTTGTTGCAGGGCCCACTTCTTAAGCGATCTGAAACTCTGAGGAAATGGAATGAGCGATGGGTGATCTTAGACCCAACTACTGGGAAAATGGAATA CAAAACTAGGAGAAATGAGCCAGCTTTGAAAGGGACGATTCTCTTCGATGCAAATAGCACCATCGCAGTTTCTCCTGTAAACTTCAATGGGCTCCCAAAG TACGATGGATGCTGTTTTTACATTGGTACTCCCCAGAGAAAAGATTACTTCCTCTGTGCAGAGACTCCTGGTGCAGCTAGAGCTTGGGTAGCAACTTTAC ATGCTACTCAGTTGGTTCTAAAGGCTCATAAAGAGGCTGTGGACTCCTTAAGTGGAAATGGTTCTGCAAAATTAGGAACGGTTGCCACTGTAGTTGCTGC AGCCAATTCAACAGCGCTGGAATGCTCAAAAGAAATTGAAGCAGCAATGCAGATTTCTTTAAGAAATGCTTTAGGAATGATGAATAATAGGACAACTGAT GGTCCAATGGATGACAAGACAATCCTGAAGGAGACGCTGAGAGTCAAGGATGAGGAATTACAGAATCTGGCTCGAGATATTCGTGCTCGTGACTCAATAA TAAAAGACATAGCAGATAAACTATCTGAGACAGCTGAAGCTGCTGAGGCTGCAGCATCTTCTGCTCATACTATGGATGAACAGAGAAGAATTGTTTGTGC TGAAATTGAGCGGTTATCAAAAGCTTCAGAAAAGCAGCTGGAGTCATCCATGTTGAAGTTAAAAGAGTATGAAGAAAAGGTTGTGACTCTGAGTAAGGAA AGAGATCAACTGATCAGGCAGAGAGACTCTGCCATCCAGGAGGCAAATTTATGGCGTTCTGAGATTGCAAAAGCCAGAGACCGTGCTCTGATATTGGAAG GAGCTGTTGTTAGAGCAGAGGAGAAGGCAAGAGTTGCAGAAGCAGATGCTGAAGCTAGAATAAAGGAGGTTGCACAGAGAGAGGCAGCTGCTGTGAAGGA GAAGGAAGAGCTTCTAGCATACGTGAATATGTTACAGGCACAACTTCAAAGGCAGCACAAAGATACAAAGCAAGTTTTCAAGGAGAAAATGGAGACTCCA AATGTTGTTGACAGCACTCTTCCCCTGACTAAGCATGTAGACTTGTCAGATGAGAATGTTGATAAAGCTTGTCTTAGTGTTTCTAGAGCTGTCCCAGCTG CTGGGGAGAATGTTGTGCACATGGCAGTGGATCAAAGCAACCCCCGGCCAGTTGAAGATGCTGAATGGAGCGATATTCAGGCAACAGAGTCAACAATAGC TGATGTCAGAGAAGTTGCACCGGAGATAGATGGAAGCAGCCTGGATATTCCTGTTGTTAGGGCACCTGTAAATAATCATCATGAGCAAGGAGCCAACACC TATCATCAGGCTTGA
AA sequence Show only first row Show all	>Potri.005G205300.1 pacid=42802431 polypeptide=Potri.005G205300.1.p locus=Potri.005G205300 ID=Potri.005G205300.1.v4.1 annot-version=v4.1 MASNGASTQQQRPAVGTENSLEKIKRQLASGSGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKTRRNEPALKGTILFDANSTIAVSPVNFNGLPK YDGCCFYIGTPQRKDYFLCAETPGAARAWVATLHATQLVLKAHKEAVDSLSGNGSAKLGTVATVVAAANSTALECSKEIEAAMQISLRNALGMMNNRTTD GPMDDKTILKETLRVKDEELQNLARDIRARDSIIKDIADKLSETAEAAEAAASSAHTMDEQRRIVCAEIERLSKASEKQLESSMLKLKEYEEKVVTLSKE RDQLIRQRDSAIQEANLWRSEIAKARDRALILEGAVVRAEEKARVAEADAEARIKEVAQREAAAVKEKEELLAYVNMLQAQLQRQHKDTKQVFKEKMETP NVVDSTLPLTKHVDLSDENVDKACLSVSRAVPAAGENVVHMAVDQSNPRPVEDAEWSDIQATESTIADVREVAPEIDGSSLDIPVVRAPVNNHHEQGANT YHQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30880			Pleckstrin homology (PH) domai...		Potri.005G205300 [exp]	0	1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.003G115500 [exp]	10.48	0.7074
AT3G13340			Transducin/WD40 repeat-like su...		Potri.011G168600 [exp]	15.65	0.6843
AT1G01910			P-loop containing nucleoside t...		Potri.014G078100 [exp]	15.65	0.6831
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	19.20	0.6814	Pt-ACT2.2
AT4G32600			RING/U-box superfamily protein...		Potri.006G247000 [exp]	21.97	0.6888
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	26.83	0.6809
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.012G047100 [exp]	35.74	0.6831
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.001G418500 [exp]	37.76	0.6631
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.007G093600 [exp]	43.35	0.6481	Pt-UBP3.1
AT2G25740			ATP-dependent protease La (LON...		Potri.018G046700 [exp]	52.38	0.6368

Compare expression of checked genes

Potri.005G205300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.