Plant FIBer expression Database

Potri.005G205700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06660 275 / 5e-87 JASON JASON, unknown protein
AT2G30820 219 / 2e-66 unknown protein
AT1G04030 67 / 1e-11 unknown protein
AT5G44040 46 / 4e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G057000
[exp]
721 / 0 AT1G06660 325 / 7e-106 JASON, unknown protein
Potri.002G258501
[exp]
81 / 4e-16 AT1G04030 172 / 1e-48 unknown protein
Potri.013G047700
[exp]
54 / 1e-07 AT1G04030 147 / 1e-39 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020732
[exp]
400 / 1e-135 AT1G06660 310 / 1e-100 JASON, unknown protein
Lus10001051
[exp]
355 / 1e-117 AT1G06660 283 / 6e-90 JASON, unknown protein
Lus10001417
[exp]
278 / 4e-88 AT1G06660 228 / 3e-69 JASON, unknown protein
Lus10003613
[exp]
75 / 3e-14 AT1G04030 211 / 1e-63 unknown protein
Lus10008231
[exp]
69 / 4e-12 AT1G04030 202 / 1e-59 unknown protein
Lus10003912
[exp]
44 / 0.0001 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1)
PFAM info
Representative CDS sequence
>Potri.005G205700.1 pacid=42803603 polypeptide=Potri.005G205700.1.p locus=Potri.005G205700 ID=Potri.005G205700.1.v4.1 annot-version=v4.1
ATGGGTTGTTTCTTTACCTGCTTGCGTACTAAAGAAGATCGATCCAATCGGTCTCGACCTCACGCCATCTCCTCAGATTCTCTTCGATCCGAACCTGCTC
TTGAACCTGGGGTATCTAAAAATCGTTTATCGTCTCTATTTTTGTCTGAAGAGAAAGAAGAATCTTTGCGTGGCGACGTTGAGAATCCTTGTTTAGGATC
TCCACATATTAACAAAGGACTTAGGGATGAGGCTAAATTTCTTAAAGCTTGTGGTACATTGACAGAAACTCCAATTGAAATTCGGAAAGCTTGCGAAAAG
TTTAATGGTTCACCTACTCTTGATAAAGATTCAGAACCTTCAAAATTTCATTCATGGCTTCCCAGCACATCGATCAAGAAACTTCAATTGGATAATCAAA
CAGATCAGCCTCTTACTCCGGTTAAACTTTGTGAAGAGTGGGGAAAGGGTTCAGTTTCTTCTGAGCAGACACCTAGCAGTAGCTGTATAACAAATGTGCA
CAACAGTGAAGATAGTGAGTCAGGGAGTCGTGAAAGAGTGATCAAGGTTCAAGCAAATGAGAATGATGATGTTGTTGCTGGTCCTCCTTGGCTTTCAGCT
TCGATTGTTCAGAGCAGGAACAAGTCTGTTCGCTTCGAATGTGATTTTGATACATCTTCCTCCAAAGGGTCTTCATCTGAAAATAGTTGCCAAGTTCCTG
GGAAATATGAATCTCCAGGGAATCTGAGTGTTTCAAAGCCTTCTCCTAAACCAACCCCTTTAAAACTTTTGGACGACATGCAAACACCCGGTACTGTTTT
CCCTGCAAACCTAGAAACTTCAGATAATGGAAAGACTAGGTTCAGGTCCCAACATGTTTATTCAGTCCTGAACCCGGTTGAAAGTGCCTCTCAGTGGAAG
TTATTGAAGGAAGATGATTTCAACTCACTTCGACTGTCAGGTGAGCCGAGAGAATCTCTAGAACAGTCTGAAAGTGCAACTCCTAAACCGGAAAGGGGAG
TAAAAGAATCTTCCTCTGGGAAAGATTTGAAGGTAGAAGCGAGCTTGTCTTCTTGGTTCAAACCATCACAGTCCACACTTGGTGAAGATAATCCAAATAC
CGGTACTGCTTCTAGCAAAAATTTTCGTTTTGGTAGAACTCCTGGGGACAGGCCTATCATTGGAATGGTTGCTGCGCACTGGAATGAAAATGAACCTTCT
CAAATCTCCCCAAAGTGGTGGGATGGAAATGGGATTCCAAATTCGACAAACAAATATAAGGAGGATCAGAAAGTAAGCTGGCATGCAACACCATTTGAGG
AGAGGTTAGAGAAGGCATTGTCTGAAGAGAGTGTCATCTCACAAAGGAAGCCAATCAGCGGGAGACCCATTGTTTTTGACGAATGCGAGGAAAGTGATAC
TGCTCTATCTCGGTTGCAAACCTCAACACAAGCCAAGTCAGTTGTTTCGTTCTGA
AA sequence
>Potri.005G205700.1 pacid=42803603 polypeptide=Potri.005G205700.1.p locus=Potri.005G205700 ID=Potri.005G205700.1.v4.1 annot-version=v4.1
MGCFFTCLRTKEDRSNRSRPHAISSDSLRSEPALEPGVSKNRLSSLFLSEEKEESLRGDVENPCLGSPHINKGLRDEAKFLKACGTLTETPIEIRKACEK
FNGSPTLDKDSEPSKFHSWLPSTSIKKLQLDNQTDQPLTPVKLCEEWGKGSVSSEQTPSSSCITNVHNSEDSESGSRERVIKVQANENDDVVAGPPWLSA
SIVQSRNKSVRFECDFDTSSSKGSSSENSCQVPGKYESPGNLSVSKPSPKPTPLKLLDDMQTPGTVFPANLETSDNGKTRFRSQHVYSVLNPVESASQWK
LLKEDDFNSLRLSGEPRESLEQSESATPKPERGVKESSSGKDLKVEASLSSWFKPSQSTLGEDNPNTGTASSKNFRFGRTPGDRPIIGMVAAHWNENEPS
QISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESVISQRKPISGRPIVFDECEESDTALSRLQTSTQAKSVVSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06660 JASON JASON, unknown protein Potri.005G205700
[exp]
0 1
AT5G43230 unknown protein Potri.008G177500
[exp]
2.44 0.9050
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.002G242500
[exp]
2.64 0.9246
AT5G45290 RING/U-box superfamily protein... Potri.001G127100
[exp]
3.74 0.9203
AT2G32850 Protein kinase superfamily pro... Potri.001G228100
[exp]
5.19 0.9094
AT5G54690 IRX8, GAUT12, L... IRREGULAR XYLEM 8, galacturono... Potri.001G416800
[exp]
9.89 0.9033
AT1G52760 LysoPL2 lysophospholipase 2 (.1) Potri.003G059200
[exp]
10.19 0.8958
AT3G47570 Leucine-rich repeat protein ki... Potri.008G034000
[exp]
10.58 0.8936
AT3G28050 nodulin MtN21 /EamA-like trans... Potri.003G192900
[exp]
11.18 0.8874
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.001G279500
[exp]
11.61 0.8707
AT2G40120 Protein kinase superfamily pro... Potri.008G069000
[exp]
11.61 0.9006

Potri.005G205700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.