Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19645 347 / 2e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT1G31300 347 / 3e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G10360 244 / 5e-81 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G056600 [exp] 451 / 1e-162 AT4G19645 352 / 4e-123 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.012G118100 [exp] 360 / 1e-126 AT1G31300 349 / 7e-122 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.015G113200 [exp] 358 / 1e-125 AT1G31300 406 / 3e-144 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.019G133500 [exp] 239 / 1e-78 AT4G10360 281 / 2e-95 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018287 [exp] 350 / 2e-122 AT1G31300 375 / 5e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10038335 [exp] 349 / 5e-122 AT1G31300 375 / 3e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10036199 [exp] 346 / 1e-120 AT4G19645 379 / 6e-134 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10040622 [exp] 324 / 1e-111 AT1G31300 336 / 4e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10034433 [exp] 239 / 7e-79 AT4G10360 321 / 3e-111 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10019130 [exp] 234 / 7e-77 AT4G10360 315 / 7e-109 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [poplar] [flax] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Potri.005G206000.2 pacid=42802617 polypeptide=Potri.005G206000.2.p locus=Potri.005G206000 ID=Potri.005G206000.2.v4.1 annot-version=v4.1 ATGGCGATGAAATCATACCAAATTAACGCGGAGCTGCTGCTGAAGGAATATTTACTAGCTGGTCCTTTGATTCCGTACACTTCTATCACAGGTGGCATTT TTGCTTGCAAGATGGTCTATGATCTTACCAGCTTGTTCAGTGCTGTTTATTTTAAGAGCTATTCCAACCTCACCAATTTGCAACGTATTGAATGGAACAA CCGTGCTATATCCACTTTCCATGCTGTTTTCATTACAATGATGTCATTATACTTTGTATTTTGCTCTGATCTCTTCTCTGACCAACCTCACGCTGGCCTT GTTACATTTCGGAGTTCTGCACTGTCTACATTTGCATTGGGGGTTTCTGCTGGTTATTTCATTGCTGACCTTGGGATGATTATTTGGTTTTATCCTTCTC TGGGTGGGATGGAATATGTGATTCATCATTCTCTTTCCCTGATTGCTGTGGCATATTCGATGTTGACTGGGGAGGGGCAACTTTACACCTACATGGTTCT TATCTCTGAGACAACTACTCCTGGAATCAATTTGAGATGGTATCTTGACACAGCTGGAATGAAGAAGTCTAAAGCATATCTCTTAAACGGGGTTGTGATA TTCTTCGCTTGGTTTGTTGCTAGGATACTCTTGTTTATCTACCTGTTTTACCATGTCTTCCTGCACCAATATCAGGTCAAGCAAATGCACTCCTTTGGAC GACTCCTGGCACTGGTAGTGCCAGTAGTGCTATCTGTCATGAATTTGATGTGGTTTTGGAAGATTTTCAAAGGAATGAAAAAAACATTAGCAAAGCGGCA CTGA
AA sequence Show only first row Show all	>Potri.005G206000.2 pacid=42802617 polypeptide=Potri.005G206000.2.p locus=Potri.005G206000 ID=Potri.005G206000.2.v4.1 annot-version=v4.1 MAMKSYQINAELLLKEYLLAGPLIPYTSITGGIFACKMVYDLTSLFSAVYFKSYSNLTNLQRIEWNNRAISTFHAVFITMMSLYFVFCSDLFSDQPHAGL VTFRSSALSTFALGVSAGYFIADLGMIIWFYPSLGGMEYVIHHSLSLIAVAYSMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKKSKAYLLNGVVI FFAWFVARILLFIYLFYHVFLHQYQVKQMHSFGRLLALVVPVVLSVMNLMWFWKIFKGMKKTLAKRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G206000 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	10.34	0.8875
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.009G159800 [exp]	14.17	0.8860
AT2G35658			unknown protein		Potri.001G152700 [exp]	18.73	0.8702
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	21.67	0.8870
AT5G05710			Pleckstrin homology (PH) domai...		Potri.010G190500 [exp]	23.66	0.8780
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	29.12	0.8819
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.019G030900 [exp]	36.98	0.8522	Pt-SIP1.2
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	41.35	0.8796
AT5G39380			Plant calmodulin-binding prote...		Potri.015G049600 [exp]	42.70	0.8191
AT1G49350			pfkB-like carbohydrate kinase ...		Potri.004G152100 [exp]	46.04	0.8211

Compare expression of checked genes

Potri.005G206000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.