Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HVT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30800 1373 / 0 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 1238 / 0 NIH nuclear DEIH-boxhelicase (.1) AT2G35920 346 / 9e-102 RNA helicase family protein (.1) AT2G01130 295 / 5e-83 DEA(D/H)-box RNA helicase family protein (.1) AT1G58060 296 / 1e-82 RNA helicase family protein (.1) AT1G48650 291 / 3e-81 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G04895 283 / 1e-78 DEA(D/H)-box RNA helicase family protein (.1) AT1G58050 281 / 2e-77 RNA helicase family protein (.1) AT3G26560 189 / 1e-48 ATP-dependent RNA helicase, putative (.1) AT4G18465 171 / 6e-44 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068900 [exp] 352 / 1e-103 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G117800 [exp] 327 / 2e-93 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 315 / 1e-89 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 310 / 8e-88 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.008G014100 [exp] 294 / 1e-82 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G222900 [exp] 274 / 3e-75 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.012G034200 [exp] 184 / 8e-47 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 183 / 1e-46 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.004G052700 [exp] 173 / 1e-44 AT4G18465 1092 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001415 [exp] 1350 / 0 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 1329 / 0 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10020727 [exp] 1310 / 0 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10001049 [exp] 310 / 7e-97 AT2G30800 244 / 1e-73 helicase in vascular tissue and tapetum (.1) Lus10009022 [exp] 321 / 1e-92 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009012 [exp] 312 / 3e-88 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 303 / 6e-86 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10013479 [exp] 301 / 1e-84 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 298 / 1e-83 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 290 / 3e-81 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF01424 [poplar] [flax] R3H R3H domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.005G206500.2 pacid=42803364 polypeptide=Potri.005G206500.2.p locus=Potri.005G206500 ID=Potri.005G206500.2.v4.1 annot-version=v4.1 ATGAACAATCAAGAAACCAAAGCACAGAAAGGAAAAATGGGTAAGAAGAACCAGAGGAAAGCAGCGCAGCAGCAAAACCCTAGAGTTGCAGAAGCTACTC TTATTCGAATCTCGAAAATTCTTGAAAGGTTCCGTGCTGCCCCCGATCAAGTTTACACATTCGAAGCTAACCTATCAAACTATGACCGTGCTGTGGTACA TGAGGTGTGCAAGAAAATGGGTATGAAGTCCAAGAGTTCTGGGCGCGGGGGGCAGCGACGTGTTTCTGTTTACAAGAACACAAAGAAGTTAGATGATGTA AAGGGGAAGGAAAACCTCACTCATTTGACATTTTCAGGAGAATCAAAAATGGTTTTGGGAGAACTATTTTCAAACTACCCTCCTGAAGAAGGAGGCTTTG GAGCAGAGCTAGAAGGAAAACATAGTGGAACTGCTGGTAAAACACGAGAGAAAAAAGATGATATCTTCTCTAAACCTTCTAGAAAAAAAGCAGAAATTGC AAAGAAGGTTGAATCATTTGCTTCTAGAATAGAAAAGGATGTAAAGTTAAAACAGATTGTTGAAGGGAGGTCTAAGCTTCCGATTGCATCCTTTATGGAT GTCATTACATCCACTATAGAATCTCACCAGGTTGTTCTCATTTCTGGTGAGACTGGGTGTGGAAAGACAACACAGGTGCCACAATTTCTTTTGGACCACA TGTGGGGAAAGGGTGAAGCATGTAAAATAGTTTGTACACAACCTCGACGTATCTCTGCAATATCAGTTTCTGAGAGAATTTCTTATGAAAGAGGAGAAAA TGTTGGAGATAGCGTTGGATACAAGATTCGTTTGGAAAGTAAAGGTGGGAAGCACTCGTCAATTGTGTTCTGTACAAATGGGGTTCTATTGAGGATTCTG GTTTCCAAGGGCATCACTGGGTCGCAGAATGAAGCTAATACAGCGGCCAAGGAAAATGTTTCCGACTTAACTCATATTATTGTGGATGAAATTCATGAAA GGGATCGCTTCTCTGATTTCATGTTGGCAATTATTAGGGACATACTTCCTTCACATTCTCATCTTCGGCTGATATTGATGAGTGCCACTCTTGATGCTGA ACGATTTTCACAATATTTTGGTGGCTGCCCAATTATCCGCGTTCCTGGGTTCACTTATCCTGTCAAAGCTTTCCATTTGGAGGATGTGCTTTCTATCTTA AATTCCAGAGATGATAATCATCTTGATTCTGCTATGCCAAATGTCCTGGATGAAGGTCATGAATTAACAGAGGAAGATAAAGCTGCTTTAGATGAAGCTA TTAACTTGGCTTGGTCAAATGATGAATTTGATTCCCTCCTAGATTTGGTTTCTTCTGAAGGAACCCCAAAGGTGTATGATTATCAGCATTCTGTGAGTGG ACTGACACCACTGATGGTCTTTGCTGGAAAGGGTAGGGTTGGTGATGTTTGCATGCTCCTCTCTTTGGGCGCAAACTGCAATTTACAGTCCAAGTGTGGA TTAACAGCACTGAAATGGGCTGAACGAGAAAACCAGGAAGAAGCTGCTGAAGTAATAAGAAAACATGCTCAGAATGCCTTGGCTGATTCCTCGGAACAAC AGCAACTTCTTGATAAATATATGGCAACAATTAATCCTGAACTTATTGATGTGGTTCTTATAGAGCAGTTAATAAAGAAAATATGTGTTGATTCCAAAGA TGGTGCTATCCTTGTTTTTCTTCCAGGGTGGGATGATATAAATAGAACGCGGGAGAGATTACTTGCGAACCCGTTTTTTAAAGATGGTTCCAAGTTTATT ATAATCTCTCTCCATTCTATGGTTCCATCTGTGGAGCAAAAGAAGGTATTCAAACGCCCACCTCAGGGTTGCCGAAAAATCATTCTTTCAACTAATATTT CTGAAAGTGCCATTACTATTGATGATGTGGTATATGTTATAGATAGTGGACGCATGAAAGAAAAAAGTTACGATCCTTATAACAATGTATCAACTCTTCA ATCATCCTGGGTATCTAAAGCAAGTGCAAAGCAACGAGAGGGACGTGCAGGGCGCTGTCAGCCTGGAATATGTTATCATCTATATTCAAAACTCAGAGAA TCTTCTTTGCCAGATTTCCAAGTTCCTGAAATCAAGAGAATGCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTGATCCCCATTGCAAGATAGAAG CTTTCTTGCAAAAGACATTGGACCCTCCGGTTCCAGAAACCATACGCAATGCTGTTGCTGTTCTTCTAGATATTGGGGCTTTATCAGTGGATGAAACATT GACAGAACTGGGAGAGAAGATCGGTTGCCTACCTGTTCATCCATTGACGAGCAAGATGATTTTCTTTGCCATATTGATGAATTGCCTTGACCCAGCTTTG ACACTGGCATGTGCATCTGATTATAGAGATCCATTTACCCTTCCTATGCTGCCTAATGAAAAGAAGAGAGCTGCTGCTGCTAAGTTTGAGCTTGCTTCAT TGTATGGTGGGCACAGTGATCAGCTAGCAGTTTTAGCAGCTTTTGAGTGCTGGAACAATGCGAAGAATAGGGGTCAAGAAGCATCGTTTTGTTCACAATA CTTCATCTCTTCAAGCACCATGAATATGCTGCAAGCCATGCGTAAACAGCTCCAGAGAGAACTAATACGCAAGGGGTTTATTCCAGAAAATGTCTCTAGT TGTAATACAAATGCGCATGTTCCAGGTATAGTCCATGCTGTCCTTGTGGCTGGTCTGTATCCAATGGTGGGGAGGTTCCTTCCACCTAAAAATGGAAAGC GTGTTGTGGAGACTACTAGCGGTGCTAAAGTTCGGTTGCACCCTCAGTCCCTTAATTTTAAATTATCATTTTGGAAATCTAATGACTACCCATTGGTTAT ATATGATGAGATAACTCGAGGAGATGGGGGTATGCACATAAGGAACTGTACTGTCATTGGTCCACTGCCATTATTGCTACTCGCAACAGAGATTGTAGTC GCTCCTGCAGAGAATGATGACGAGGATGATGAGGAGGACGACGACGACTATGATAGTGCAGATGGAGCTGAAAGTGATGAAGATGGAATGGAGATACATG GCAAATTAGGCACTCAACAGGGTGAGAGGATCATGTCCTCTCCCGATAATTCAGTTATGGTTGTTGTGGATCGGTGGCTTTATTTTGGAGCAACAGCCCT TGATGTTGCTCAAATTTACTGCTTGAGAGAGCAATTATCTGCAGCAATCTTATTCAAAGTGACACATCCTCACAAAGAACTTCCTCCTGCTCTTGCGGCC TATACATATACTACGGCTTGTATTCTGTCCAATGATGGGCTATCTGGGATTTCATTACCAGGAGAATCCGTGGAGTCACTGACTTCAATGGTCCATGCAA CTGAGATTGACGAGTCCTGTTCTGGAAGGAGAGGGATCAGTCAGAATCCAAATAGCTTCCTTAGCTCGCTGAAGAACAACACACAGCAGACCGCTCCTCG TTATCACAATGCTAGGAGTCCTAATCAAAGGCCTACATTGCAAGGCTCCACATCAGCTGGGCACAGTATGCAAGGGCCATCGGGTCCAAGGGGAGATTCC TATAAGCGGCAGCGTGGAAATGCAACCAGACAGCACGTACGCTATTTGTAG
AA sequence Show only first row Show all	>Potri.005G206500.2 pacid=42803364 polypeptide=Potri.005G206500.2.p locus=Potri.005G206500 ID=Potri.005G206500.2.v4.1 annot-version=v4.1 MNNQETKAQKGKMGKKNQRKAAQQQNPRVAEATLIRISKILERFRAAPDQVYTFEANLSNYDRAVVHEVCKKMGMKSKSSGRGGQRRVSVYKNTKKLDDV KGKENLTHLTFSGESKMVLGELFSNYPPEEGGFGAELEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKDVKLKQIVEGRSKLPIASFMD VITSTIESHQVVLISGETGCGKTTQVPQFLLDHMWGKGEACKIVCTQPRRISAISVSERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGVLLRIL VSKGITGSQNEANTAAKENVSDLTHIIVDEIHERDRFSDFMLAIIRDILPSHSHLRLILMSATLDAERFSQYFGGCPIIRVPGFTYPVKAFHLEDVLSIL NSRDDNHLDSAMPNVLDEGHELTEEDKAALDEAINLAWSNDEFDSLLDLVSSEGTPKVYDYQHSVSGLTPLMVFAGKGRVGDVCMLLSLGANCNLQSKCG LTALKWAERENQEEAAEVIRKHAQNALADSSEQQQLLDKYMATINPELIDVVLIEQLIKKICVDSKDGAILVFLPGWDDINRTRERLLANPFFKDGSKFI IISLHSMVPSVEQKKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRE SSLPDFQVPEIKRMPIEELCLQVKLLDPHCKIEAFLQKTLDPPVPETIRNAVAVLLDIGALSVDETLTELGEKIGCLPVHPLTSKMIFFAILMNCLDPAL TLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSDQLAVLAAFECWNNAKNRGQEASFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSS CNTNAHVPGIVHAVLVAGLYPMVGRFLPPKNGKRVVETTSGAKVRLHPQSLNFKLSFWKSNDYPLVIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVV APAENDDEDDEEDDDDYDSADGAESDEDGMEIHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLSAAILFKVTHPHKELPPALAA YTYTTACILSNDGLSGISLPGESVESLTSMVHATEIDESCSGRRGISQNPNSFLSSLKNNTQQTAPRYHNARSPNQRPTLQGSTSAGHSMQGPSGPRGDS YKRQRGNATRQHVRYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Potri.005G206500 [exp]	0	1	HVT1.2
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	3.00	0.9004
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	5.09	0.8603
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	11.22	0.8595
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	11.31	0.8323
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Potri.004G043200 [exp]	11.83	0.8560
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	14.00	0.8565
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	14.96	0.8518
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	15.49	0.8173
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Potri.009G120900 [exp]	16.15	0.8262
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	16.24	0.8281

Compare expression of checked genes

Potri.005G206500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.