Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 736 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 451 / 9e-154 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 140 / 4e-37 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 118 / 2e-29 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 99 / 1e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 87 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 81 / 1e-15 TAF5 TBP-associated factor 5 (.1) AT5G56130 79 / 1e-15 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 71 / 7e-13 transducin family protein / WD-40 repeat family protein (.1) AT2G41500 71 / 1e-12 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055800 [exp] 1020 / 0 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 598 / 0 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 499 / 7e-173 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 450 / 3e-153 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 130 / 1e-33 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 125 / 6e-32 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 115 / 3e-28 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 100 / 1e-22 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 92 / 2e-20 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001046 [exp] 829 / 0 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 795 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 790 / 0 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 788 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 356 / 7e-117 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 355 / 1e-116 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001412 [exp] 227 / 1e-70 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 129 / 4e-33 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 129 / 6e-33 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 129 / 7e-33 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.005G206600.6 pacid=42803252 polypeptide=Potri.005G206600.6.p locus=Potri.005G206600 ID=Potri.005G206600.6.v4.1 annot-version=v4.1 ATGGGAGGTGTAGACGATGATGAACCAGCCTTAAAACGCCTGAAATTAGCCTCCGGAAGGTTGACAGGTCTTTCCAACGGTTCATCTTTAACAGAACCCA TAGTTGGATCTTCTAGGGATTTGATGGCTCGTCCCCTACAATCTGAAGGGGATGAAGAGGTTCTTGGTTCAAAAGGAGTTATTAAAAGAGTTGAATTTGT CAGAATAATAGCCAAGGCATTATATTCTCTTGGATATAAGAAGAGTTATGCGCGTTTAGAGGAAGAGTCAGGGATACCATTGTATTCATCTTCAGTAGAT ATATTTACACAGCAAATTCTCGATGGCAGTTGGGATGAAAGTGTAGCCACATTACATAAAATTGGTCTAAAGGATGAAAGCATTGTCAAGTCAGCATCTT TTCTGATATTGGAGCAGAAATTTTTTGAACTTTTGGATGGGGACAAAATTATGGAAGCTTTGAAGACCTTGAGGACTGAGATTACTCCTCTCTCCATTAA CAATTGTCGAGTTCGGGAGCTTTCCTCCTGCATTGTATTTCCTACACATTGTGATTCAGATGGGTCTTCGAATCAGGGCTATGGAAGGACAAAGTCTCGG ACCAAGCTGCTGGAGGAACTGCAGAAACTGCTTCCCCCAAGAGTTATAATACCTGAAAACAGATTGGAACATTTAGTTGAACAGGCTCTTACCTTACAAA AAGATGCTTGCATCTTTCACAACTTATTGGATAAAGAAATGTCTTTATACTCGGATCATCAGTGTGGAAGAGATCAGATTCCTTCTCGAACTTTGCAGAT ATTAGAAGCACATTCAGATGAAGTCTGGTTCTTACAATTTTCACATAATGGGAAATACTTAGCTTCATCCTCTAGCGATCAATCAGCAATCATATGGGAG ATTGATGTAAATGGTGGAGTTTCTTTGAAGCATAGATTATCTGGTCACCAAAAACCTGTCTCCTCTGTTTCTTGGAGTCCTGATGACCATCAGCTTCTCA CTTGTGGGGTGGAGGAGGTTGTCAGGCGCTGGGATGTTTCTTCTGGTGAATGCCTTCAGGTTTATGAGAAAGTGGGCCTTGGCCTGGTGTCATGTGGATG GTTTCCAGATGGAAAATGGATATTTTCTGGCATCAATGATAAGAGCATCTGCATGTGGGAATTGGATGGGAAAGAGGTAGAATGTTGGAAAGGGCAGCGA ACTCTGAAGATTTCTGATTTAGAGATAACGAGTGATGGGAAGCAGATTATAAGTATGTGTAGAGGAACTGCACTACTATTACTTGATAGAGAAGCTAAAG TTGAGAGAGTGATTGAAGAGGATCAAGCAATAACTTCGTTCTCATTATCAAGGGATAATAGGTTCTTGCTGGTTAATCTTCTGAACCAGGAAATCCATCT TTGGAATATAGATGGTGATATCAGGCTTGTTGCCACATACAAGGGCCATAAGCGTACTCGGTTTGTTATTAGATCGTGTTTTGGGGGACATGAACAAGCT TTTATTGCCAGTGGTAGTGAGGACTCTCAGATATATTTGTGGCATAGAGCCTCAAGAGAGCTTGTAGAGGCATTGCCAGGTCATTCGGGAGCCGTTAACT GCGTGAGCTGGAATCCAGCAAATCCACACATGTTAGCATCTGCTAGTGATGATCGTACCATTCGAATATGGGGTGTAAATGCCTTGCAGGTGAAGCACAA GAGTGCTCACTGCAATGGCATCCACTACTGCAATGGAGGGAGTTGA
AA sequence Show only first row Show all	>Potri.005G206600.6 pacid=42803252 polypeptide=Potri.005G206600.6.p locus=Potri.005G206600 ID=Potri.005G206600.6.v4.1 annot-version=v4.1 MGGVDDDEPALKRLKLASGRLTGLSNGSSLTEPIVGSSRDLMARPLQSEGDEEVLGSKGVIKRVEFVRIIAKALYSLGYKKSYARLEEESGIPLYSSSVD IFTQQILDGSWDESVATLHKIGLKDESIVKSASFLILEQKFFELLDGDKIMEALKTLRTEITPLSINNCRVRELSSCIVFPTHCDSDGSSNQGYGRTKSR TKLLEELQKLLPPRVIIPENRLEHLVEQALTLQKDACIFHNLLDKEMSLYSDHQCGRDQIPSRTLQILEAHSDEVWFLQFSHNGKYLASSSSDQSAIIWE IDVNGGVSLKHRLSGHQKPVSSVSWSPDDHQLLTCGVEEVVRRWDVSSGECLQVYEKVGLGLVSCGWFPDGKWIFSGINDKSICMWELDGKEVECWKGQR TLKISDLEITSDGKQIISMCRGTALLLLDREAKVERVIEEDQAITSFSLSRDNRFLLVNLLNQEIHLWNIDGDIRLVATYKGHKRTRFVIRSCFGGHEQA FIASGSEDSQIYLWHRASRELVEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGVNALQVKHKSAHCNGIHYCNGGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08560			transducin family protein / WD...		Potri.005G206600 [exp]	0	1
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Potri.010G226700 [exp]	2.00	0.6737
AT3G17900			unknown protein		Potri.010G033900 [exp]	4.69	0.6793
AT2G33700			Protein phosphatase 2C family ...		Potri.002G007500 [exp]	9.48	0.6148
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	9.48	0.6470	NTR1.3
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.019G080800 [exp]	9.79	0.5982
AT4G35240			Protein of unknown function (D...		Potri.009G142900 [exp]	15.16	0.5362
AT5G25820			Exostosin family protein (.1)		Potri.018G043700 [exp]	18.70	0.5825
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	29.39	0.5601
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.001G060800 [exp]	43.54	0.5693
AT5G02420			unknown protein		Potri.010G231600 [exp]	44.74	0.6047

Compare expression of checked genes

Potri.005G206600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.