Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06690 589 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 231 / 6e-73 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 114 / 5e-29 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 112 / 9e-28 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 110 / 4e-27 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 107 / 3e-26 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 100 / 7e-24 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 100 / 8e-24 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G27680 99 / 7e-23 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 75 / 9e-15 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055500 [exp] 709 / 0 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 611 / 0 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 238 / 1e-75 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 118 / 3e-30 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 118 / 5e-30 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 116 / 1e-29 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 112 / 4e-28 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 110 / 3e-27 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 108 / 1e-26 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016327 [exp] 539 / 0 AT1G06690 510 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10002744 [exp] 526 / 0 AT1G06690 496 / 9e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 134 / 5e-36 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 124 / 3e-32 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 115 / 5e-29 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 110 / 3e-27 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 109 / 1e-26 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 108 / 2e-26 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 102 / 2e-24 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10020578 [exp] 100 / 3e-23 AT2G27680 595 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.005G207000.1 pacid=42802580 polypeptide=Potri.005G207000.1.p locus=Potri.005G207000 ID=Potri.005G207000.1.v4.1 annot-version=v4.1 ATGGCTATGGCTATGAATGTTAGTCCATGTTTTTGTGTTGCAAGTAATAGGAGATCAGGTAATAGAGTGAGAGCTGTTGCCTCTGAGGATCTTGTTTTTT CGAAGATAAAGGATGATAAGGTGAAGTTAGGTGGGTCTGATTTGGAGGTTACAAGGCTTGGAATTGGTGCTTGGTCTTGGGGTGATACCAGCTACTGGAA CAACTTTGAATGGGATGATAGGAAAATGAAGGCTGCTAAAGCAGCTTTTGACACAAGTGTTGATTGCGGTATAACTTTCTTTGACACTGCTGAAGTTTAT GGATCTAGGTTCTCATTTGGAGCCATAAATTCCGAAACTCTTCTAGGAAGATTTATCAAGGAAAGGAAAGTAAAAGATCCTGAAGTGGAGGTAGCTGTTG CAACCAAATATGCAGCATTGCCATGGAGGCTGGGACGTCAGAGTGTTCTAACTGCCCTTAAGGATTCCCTCAATCGCCTTGGACTTTCTTCGGTAGAGCT ATATCAACTCCATTGGCCTGGAATATGGGGAAATGAAGGATACATTGATGGTCTTGGGGATGCTGTTGAGCAGGGTCTTGTGAAGGCTGTTGGTGTTTCA AATTACAGTGCGAGCCGACTTCGTGATGCTTACGAGAAGCTTAAGAAAAGAGGTATTCCACTGGCTTCAAATCAAGTGAATTACAGCCTCATATACAGGG CACCTGAGGAGAATGGTGTGAAGGCAGCCTGTGATGAACTTGGGGTCACTTTGATTGCATATTCTCCTATTGCTCAAGGCGTTCTTACAGGAAAGTATAC ACCAGAAAATCCACCAACTGGTCCTCGAGGCCAGATTTACACTCCCGAGTTTCTAACAAAGCTCCAACCTCTGTTGAACAGAATCAAAGAAATGGGAGAG AACTACAGTAAAACTAACACACAGGTGGTATTGAACTGGCTAGTAGCCCAGGAGAATGTCATTCCGATCCCAGGGGCGAAGAATGCTCAACAGGCTGAGG AATTCGCTGGTGCACTTGGTTGGAGACTTACCAGTGAAGAGATCGATGAGCTGCGCTCCTTGGCGATGGAGATAAAACCTGTAACCGGTTTCCCCGTTGA AAAGTTGTAA
AA sequence Show only first row Show all	>Potri.005G207000.1 pacid=42802580 polypeptide=Potri.005G207000.1.p locus=Potri.005G207000 ID=Potri.005G207000.1.v4.1 annot-version=v4.1 MAMAMNVSPCFCVASNRRSGNRVRAVASEDLVFSKIKDDKVKLGGSDLEVTRLGIGAWSWGDTSYWNNFEWDDRKMKAAKAAFDTSVDCGITFFDTAEVY GSRFSFGAINSETLLGRFIKERKVKDPEVEVAVATKYAALPWRLGRQSVLTALKDSLNRLGLSSVELYQLHWPGIWGNEGYIDGLGDAVEQGLVKAVGVS NYSASRLRDAYEKLKKRGIPLASNQVNYSLIYRAPEENGVKAACDELGVTLIAYSPIAQGVLTGKYTPENPPTGPRGQIYTPEFLTKLQPLLNRIKEMGE NYSKTNTQVVLNWLVAQENVIPIPGAKNAQQAEEFAGALGWRLTSEEIDELRSLAMEIKPVTGFPVEKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.005G207000 [exp]	0	1
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Potri.005G064200 [exp]	15.58	0.8801
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.014G153800 [exp]	26.07	0.7594
AT1G30860			RING/U-box superfamily protein...		Potri.001G074800 [exp]	27.16	0.8403
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	34.62	0.8252
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.008G146000 [exp]	37.30	0.7896
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071500 [exp]	45.74	0.7310
AT5G16810			Protein kinase superfamily pro...		Potri.019G050500 [exp]	53.66	0.8256
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.006G229300 [exp]	58.48	0.8252	gdcP1,Pt-GDCP.2
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Potri.002G238300 [exp]	82.21	0.7526
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148200 [exp]	100.69	0.7940

Compare expression of checked genes

Potri.005G207000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.