Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43020 820 / 0 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 775 / 0 ATPAO3 polyamine oxidase 3 (.1) AT1G65840 597 / 0 ATPAO4 polyamine oxidase 4 (.1) AT4G16310 213 / 1e-59 LDL3 LSD1-like 3 (.1) AT3G13682 176 / 5e-48 LDL2 LSD1-like2 (.1) AT1G62830 173 / 1e-46 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 169 / 3e-45 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT5G13700 135 / 1e-34 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G29720 110 / 8e-26 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055300 [exp] 910 / 0 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.004G075800 [exp] 620 / 0 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 610 / 0 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.005G235400 [exp] 212 / 1e-59 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 211 / 5e-59 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.008G035200 [exp] 168 / 9e-45 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 167 / 2e-44 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.010G227200 [exp] 164 / 3e-43 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 161 / 1e-42 AT3G13682 959 / 0.0 LSD1-like2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029804 [exp] 802 / 0 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10020726 [exp] 800 / 0 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 717 / 0 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10001044 [exp] 441 / 1e-154 AT2G43020 439 / 2e-154 polyamine oxidase 2 (.1) Lus10033928 [exp] 217 / 3e-61 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 216 / 1e-60 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10015996 [exp] 167 / 1e-44 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 166 / 3e-44 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 163 / 5e-43 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10037885 [exp] 162 / 6e-43 AT3G13682 969 / 0.0 LSD1-like2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G207300.1 pacid=42805687 polypeptide=Potri.005G207300.1.p locus=Potri.005G207300 ID=Potri.005G207300.1.v4.1 annot-version=v4.1 ATGGTTTCGGAATTGAAGAGTAATCGCCCTCAGTTACGTAGAGGTCTATGTTATTCGAATGAGGGGAGGGGGCAAGCAACAAGATCACCGTCAGTTATAG TGATAGGCGGTGGAATTGCCGGAGTGGCGGCAGCACGAGCTTTGCATGATGCTTCAATTCAGGTTGTCTTGTTAGAATCAAGAGACAGGCTTGGAGGTCG TGTTCATACTGATTTCTCTTTTGGTTTTCCTGTCGACCTTGGTGCATCATGGTTGCATGGGGTGTGCAAAGAGAATCCTTTGGCACCATTGATTGGGAGG TTAGGGCTGCCCTTGTACCGTACTAGTGGTGATAACTCCGTCTTGTATGACCATGATCTTGAAAGCTATGCACTCTATGATATGGATGGGAACCAAGTTC CACAAGAATTGGTCACCAAAGTTGGCGAAGCATTTGAGAACATTTTAAAGGAGACAGATAAAGTAAGACTCGAAAACAATGAAGACATGTCTATACTCCG TGCTTTCTCAATTGTTTTTGAAAGACGACCAGATTTAAGGTTGGAGGGTCTTGCCCACAAGGTGCTTCAGTGGTATTTATGCAGAATGGAAGGATGGTTT GCCGCTGATTCTGAGACGATATCACTTAAAGGCTGGGATCAGGAAGAACTGCTCCCTGGTGGGCATGGGCTTATGGTCAGGGGCTACCTTCCTGTCATTA ACACTCTTGCCAAAGGCCTTGACATCCGCTTGGGCCACAGGGTGACAAAAATAGTGAGGCATTATAATGGAGTAAAGGTAACAGTGGAAGATGGAAGAAC ATTTATGGCCGATGCTGCTGTTGTTGCCATTCCTCTTGGCGTGCTGAAATCTAAGACCATAATGTTCGAACCAAAACTTCCAGACTGGAAGGAAGAAGCC ATCAAGGACCTTGGAGTGGGAATTGAGAATAAGATTGTGTTGAACTTCGAACAGGTGTTCTGGCCAAAAGTAGAGTTCTTGGGTGTGGTTGCAGAGACAT CTTATGGATGCAGCTACTTCCTGAATCTTCACAAGGCAACTGGCCACCCTGTCCTTGTTTACATGCCTGCTGGGAAGCTTGCCAGAGACATTGAGAAAAT GTCTGATGAAGCTGCTGCTAATTTTGCTTTTATGCAACTCAAGAAGATCCTTCCTGATGCTTTTGCACCGATTCAGTATCTTGTTTCTCGGTGGGGCTCA GATATCAACTCACTTGGTTCCTATAGCTATGATACAGTAGGCAAACCCCATGAACTGTATGAGAGGCTGAGGATCCCTGTAGATAACCTATTCTTTGCAG GTGAGGCAACAAGTGTGAGCTACCCAGGGTCAGTGCATGGTGCATTCTCAACTGGATTGATGGCCGCAGAAGATTGCAGGATGCGTGTTCTGGAGCGTTA TGGAGAGTTGGACTTGTTTCAGCCAGTCATGGGTACCGAGGAGGCGCCAGTGTCTGTCCCGCTCTTGATCTCACGAATTTAA
AA sequence Show only first row Show all	>Potri.005G207300.1 pacid=42805687 polypeptide=Potri.005G207300.1.p locus=Potri.005G207300 ID=Potri.005G207300.1.v4.1 annot-version=v4.1 MVSELKSNRPQLRRGLCYSNEGRGQATRSPSVIVIGGGIAGVAAARALHDASIQVVLLESRDRLGGRVHTDFSFGFPVDLGASWLHGVCKENPLAPLIGR LGLPLYRTSGDNSVLYDHDLESYALYDMDGNQVPQELVTKVGEAFENILKETDKVRLENNEDMSILRAFSIVFERRPDLRLEGLAHKVLQWYLCRMEGWF AADSETISLKGWDQEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKIVRHYNGVKVTVEDGRTFMADAAVVAIPLGVLKSKTIMFEPKLPDWKEEA IKDLGVGIENKIVLNFEQVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGKLARDIEKMSDEAAANFAFMQLKKILPDAFAPIQYLVSRWGS DINSLGSYSYDTVGKPHELYERLRIPVDNLFFAGEATSVSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGTEEAPVSVPLLISRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.005G207300 [exp]	0	1
AT1G23149		CPuORF29	conserved peptide upstream ope...		Potri.008G131550 [exp]	1.41	0.7812
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.005G082100 [exp]	2.44	0.7365
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	3.46	0.7548
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.005G099200 [exp]	4.47	0.7223
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	9.48	0.6822
AT3G24600			Late embryogenesis abundant pr...		Potri.006G160100 [exp]	10.58	0.6949
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	14.49	0.7178
AT1G05870			Protein of unknown function (D...		Potri.007G126700 [exp]	14.96	0.6936
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.009G155800 [exp]	17.66	0.6298
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	17.88	0.6813

Compare expression of checked genes

Potri.005G207300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.