Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37020 695 / 0 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19220 518 / 5e-168 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 506 / 2e-162 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G19850 487 / 3e-158 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 394 / 3e-123 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 378 / 2e-119 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 372 / 1e-115 ARF ARF4 auxin response factor 4 (.1) AT3G61830 356 / 6e-112 ARF ARF18 auxin response factor 18 (.1) AT2G46530 356 / 1e-111 ARF ARF11 auxin response factor 11 (.1.2.3) AT2G33860 344 / 3e-107 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055000 [exp] 1524 / 0 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.011G091900 [exp] 1174 / 0 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.001G358500 [exp] 1140 / 0 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 738 / 0 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 724 / 0 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.006G138500 [exp] 538 / 5e-175 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 536 / 1e-174 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.005G236700 [exp] 523 / 2e-171 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.018G145800 [exp] 525 / 1e-170 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033597 [exp] 1303 / 0 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 1230 / 0 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10033598 [exp] 1141 / 0 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 725 / 0 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 723 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 722 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 703 / 0 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2) Lus10024320 [exp] 513 / 1e-170 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10027600 [exp] 519 / 1e-168 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10012421 [exp] 512 / 3e-167 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.005G207700.3 pacid=42804585 polypeptide=Potri.005G207700.3.p locus=Potri.005G207700 ID=Potri.005G207700.3.v4.1 annot-version=v4.1 ATGGTGGGAGGAATGAGACTTTCTTCTTCTTCTTCTTCTACTGGGTTTAATCAGCAGACTCCAGAAGGGGATAAAAAATGTTTGAATTCTGAGCTATGGC ATGCATGCGCGGGGCCTCTTGTGTCTCTGCCTCACGTTGGAAGCCGAGTTGTGTACTTTCCACAGGGTCATAGTGAACAGGTTGCTGCTTCAACCAACAA GGAAGTTGATGCTCACATCCCTAATTACCCAAGCTTGCCTCCACAACTAATCTGCCAGCTTCACAATGTTACTATGCATGCTGATGTTGAGACAGACGAA GTTTATGCTCAAATGACCTTGCAGCCATTAAGTCAGGACGATCAAAAGGATGCTTACCTATTGCCAGCAGAGCTAGGTACTGCCAGCAAACAGCCGACTA ACTATTTCTGTAAAACATTGACTGCAAGTGATACTAGCACTCACGGAGGATTTTCTGTTCCTCGACGAGCAGCTGAAAAAGTCTTTCCTACTCTTGATTA CTCCCAGACGCCTCCAGCTCAAGAACTAATTGCAAGAGATCTTCATGATAATGAGTGGAAATTCAGACATATATTTCGAGGACAACCCAAGAGGCATCTT CTTACAACAGGATGGAGTGTCTTTGTTAGTGCAAAGAGGCTTGTTGCTGGTGATTCTGTCCTTTTCATTTGGAATGAGAAGAACCAATTACTCTTGGGTA TTCGGCGAGCGAATCGTCCTCAAACTTTCATGCCTTCGTCAGTTTTATCAAGTGATAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCATGCAGCAGC CACTAATAGCCGTTTTACAATATTTTATAACCCCAGGGCTAGTCCTTCAGAATTTGTCATTCCCCTGGTCAAGTATATTAAAGCAGTATACCATACAAGG GTTTCTGTGGGCATGAGATTTAGGATGCTATTTGAGACAGAAGAGTCAAGTGTCCGCCGATACATGGGTACTATAACTGGTATTAGTGATTTAGATCCTG TTCGCTGGCCAAATTCACATTGGCGCTCTGTCAAGGTTGGCTGGGATGAATCCACTGCAGGGGAGAGGCAGCCAAGAGTATCTTTGTGGGAGATTGAGCC GTTAACAACATTCCCAATGTATCCATCTGCCTTCCCTATGAGACTGAAAAGGCCATGGCCATCTGGGCTACCGTCTTTCCATGGTCTGCAAGATGGTGAT TTGAACATTAATTCACCAATGATGTGGCTTCAAGGAGGGGTTGGAGATCTGGGAGTTCAATCTTTGAACTTCCAGAGCTTTGGTGTTGCTCCTTGGATCC AGCCAAGGTTTGATACTTCTATGCCAGCTCTACAACCTGAAATGTACCAAACAATGGCAGCTGCTGCACTTCAGGAAATGCGAACAGTGGAATCTTCCAA ACTAGCTTCTCAATCTCATTTGCAGTTCCAACAATCTCAAAATGTATCTAATGGGCCTGCTGCTTTGATTCAGAGGCAGATGTTGCAGCAGTCCAATCTT CAGCACGCACTTCTTCAAAACTTTCAAGAAAACCAGGCTTCAACACAGGCCCAGTTTCTACAACAACATTTGCAGCATCGCAATCAGTATACTGGTCAGC AGCTGCAACAGCATCAACCACAGCTGCAGCAAGTTCAACAGCCTAAACAACTGAATGAATTGTCTGCCCCACAGCAGATCCCGAATGTAATATCAGCTCT GCCTCATCTTACTTCAGTCGCCCCATCCCAGTCTCCATCTTTGCAGCCAATTTCTTCCCAGTGCCAGCAGCAGGCCTTTTCAGAACCACTTGGAAACTCA ATTGCTGCATCTGATGTTTCTTCAATGCACAGTGTCATTGGTTCATTATCCCAGGATGGAGGATCCCACTTGCTTAATTCTAATGGATCCAACCCTGTCA TCTCCCCTGCTTTATTATCAAAGCGAGCAGCAATTGATCCACAGCTTTCTTCTGGTGCTGCTCATTGTGCGCTACCCCAGGTTGAACAGTTGAGAACTAC ACAATCAACTGTGTCTGATCTTGCTACCTTGTTAGCTCCATTCTCTGGAAGAGAGTATTCTACCTATCAAGGTGCTAATGATCCACAAAACAATCTGCTG TTTGGAGTTAACATTGATTCTTCAACCTTCATGCTTCAGCATGGGATACCAAACCTGAGAAATATTGGCACTGAAAATGATCCGTTGTCTATGCCATTTG CTGCTTCAACTTTTACAAGTGCTACTGGAAGTGATATTCCACTTAATTCAGACATGACAGCTTCAAGTTGTGTAGATGAATCAGGTTTCTTACAGTCCTC TGAAAATGTGGATCAAGTAAACCCATCAACAAGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTACGGGCGATCACTAGATATTTCCAAGTTCAGCAGC TATGATGAGCTTCGCAGTGAGCTTGCTCGCTTGTTTTGCCTAGAAGGCCTATTAGAGGACCCACAGAGATCAGGCTGGCAGCTTGTATTTGGTGACCGGG AGAACGATGTGCTTCTCCTTGGTGATGATCCTTGGCAGGAATTTGTGAACAATGTCTGGTATATCAAGATCCTATCTCCTCTTGAAGTGCAACAAATGGG CAAAGAAGGTCTCAGTCCTGCAGCTTCTGTCCCAAGCCAAAAGCTTTCTAATAGCAACAGCGATGGGCACATGAATACGCAGGGTTTTAGAAACTCAAGC AATGGGATTGCATCTATGGGGTCTCTTGACTACTAA
AA sequence Show only first row Show all	>Potri.005G207700.3 pacid=42804585 polypeptide=Potri.005G207700.3.p locus=Potri.005G207700 ID=Potri.005G207700.3.v4.1 annot-version=v4.1 MVGGMRLSSSSSSTGFNQQTPEGDKKCLNSELWHACAGPLVSLPHVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDE VYAQMTLQPLSQDDQKDAYLLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPTLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHL LTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTFMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAVYHTR VSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSAFPMRLKRPWPSGLPSFHGLQDGD LNINSPMMWLQGGVGDLGVQSLNFQSFGVAPWIQPRFDTSMPALQPEMYQTMAAAALQEMRTVESSKLASQSHLQFQQSQNVSNGPAALIQRQMLQQSNL QHALLQNFQENQASTQAQFLQQHLQHRNQYTGQQLQQHQPQLQQVQQPKQLNELSAPQQIPNVISALPHLTSVAPSQSPSLQPISSQCQQQAFSEPLGNS IAASDVSSMHSVIGSLSQDGGSHLLNSNGSNPVISPALLSKRAAIDPQLSSGAAHCALPQVEQLRTTQSTVSDLATLLAPFSGREYSTYQGANDPQNNLL FGVNIDSSTFMLQHGIPNLRNIGTENDPLSMPFAASTFTSATGSDIPLNSDMTASSCVDESGFLQSSENVDQVNPSTRTFVKVHKSGSYGRSLDISKFSS YDELRSELARLFCLEGLLEDPQRSGWQLVFGDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKEGLSPAASVPSQKLSNSNSDGHMNTQGFRNSS NGIASMGSLDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.005G207700 [exp]	0	1
AT3G53690			RING/U-box superfamily protein...		Potri.018G064400 [exp]	1.00	0.8689
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	1.41	0.8532
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	5.29	0.7736
AT1G25500			Plasma-membrane choline transp...		Potri.010G128100 [exp]	5.74	0.7629
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	8.06	0.7773
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	9.59	0.7898	Pt-NPH4.2
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	9.94	0.7982
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	10.09	0.7762
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	22.04	0.7496
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	24.67	0.7487	Pt-UBP15.2

Compare expression of checked genes

Potri.005G207700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.