Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27310 130 / 3e-34 F-box family protein (.1) AT2G36090 110 / 2e-27 F-box family protein (.1) AT3G44326 108 / 3e-26 F-box family protein (.1) AT4G24210 45 / 2e-05 SLY1 SLEEPY1, F-box family protein (.1) AT5G48170 41 / 0.0003 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054500 [exp] 682 / 0 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.001G452000 [exp] 184 / 3e-54 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.004G199300 [exp] 155 / 1e-43 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.009G160700 [exp] 145 / 8e-40 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.006G208400 [exp] 120 / 2e-30 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.014G022100 [exp] 43 / 0.0001 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.002G122300 [exp] 43 / 0.0001 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028024 [exp] 592 / 0 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10003731 [exp] 587 / 0 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10021330 [exp] 121 / 5e-31 AT2G36090 266 / 2e-87 F-box family protein (.1) Lus10017006 [exp] 118 / 1e-29 AT2G36090 255 / 4e-83 F-box family protein (.1) Lus10013309 [exp] 102 / 4e-24 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10042637 [exp] 44 / 8e-05 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G208200.2 pacid=42805183 polypeptide=Potri.005G208200.2.p locus=Potri.005G208200 ID=Potri.005G208200.2.v4.1 annot-version=v4.1 ATGTTGAATTACTGTCTTTATATGCATGCAGTAATTTTATCTTTTTTGTTTCTGCTATGTTCAGAGTTCCTGTCTATGGCTATGTCGGTTGGACCGGTTG AGAATGAAGCATCGTTAAGTAGTGATCTCTTCTATGATATATTGAGGCGTCTTGATGGCCCCACATTGGCCAGTGCAGCTTGTGCTTGTGCTGCGTTCTG TTCCATTTCAAAAGAAGAGAAATTGTGGGATAATGTTTGTTCTTCTATGTGGCCTTCCACGAACAGGGAAGATGTTAGAAGTTTAATATCGTCAATTGGT GGATTCAGAAAGTTTTATGCAGACTGTTTTCCGCTTATTGTTAACAAGGAAGTAACTGAGTATCAATGGAACGATTACTTAGAGTACCCTGAAGAATGGA CTGAGGCTGAATACTATGGTGATGTAGATGAATTTGAGAGTGTTGCACCGTCGGATTTTGTGTCCATTGTTGATATCAGGTACAAGGATAAAACAATCTG TTCGAAAGTACTGTGGGGCATCCCTAATGCCAATGAGTTCAATGGTTGGTTTTACAACTGTCCATTTCGTATTGATCTTCTTACCTATGCAGCTAGGGAT GATGATAATGAAGGGAAAGTTTTCCTTTCGGTTTCTGATGGTCTGCCCCCAATTTTATCTATGGAGAAAGAAAGGAAGGATGGAAAACTATGGATGGAGC TTCGTGATGGGCTTCGACTTAGTTGGATTGTTGTTAACAAAAAAATCAAGCAAGCTGCCAATCTTGCTAGCTGGAGCCCTCTCGGTGGGCAAAGGCATTG GCCTACAGACAAGGATTTTGTGATACGCTTTGGATCTGTACTTTCTGCGAAAGACATTCTTCCATGTCAAGTAGTAGAATGCATCCTTATCATGAAGTTT AGAGTGATCCACACTGAAGGAGAGGGCGTTCAGACAACTCTCAATTTAACAGAGCTGAGCATGCAGTTGGAAGACATGGAAGGCGCTCATGTCAATGGAA GAAATAGTTTGCTTATTCTCAAGGAAGCATTGAGCTGCCGCAGGAGCAAAAACCACAGTGAAGTTCTCGAGTCTTGTCATTTGTACTCAAAAGCGCAGAG CGAGTTAAGAGAGGAGAAGATGAAAATCGAAAGCAGGTTAGATAGGCTATGTATCGTAACTGGCATTGCTGCTTTCCTCACATTCTGGTACTGCATTTTG TGA
AA sequence Show only first row Show all	>Potri.005G208200.2 pacid=42805183 polypeptide=Potri.005G208200.2.p locus=Potri.005G208200 ID=Potri.005G208200.2.v4.1 annot-version=v4.1 MLNYCLYMHAVILSFLFLLCSEFLSMAMSVGPVENEASLSSDLFYDILRRLDGPTLASAACACAAFCSISKEEKLWDNVCSSMWPSTNREDVRSLISSIG GFRKFYADCFPLIVNKEVTEYQWNDYLEYPEEWTEAEYYGDVDEFESVAPSDFVSIVDIRYKDKTICSKVLWGIPNANEFNGWFYNCPFRIDLLTYAARD DDNEGKVFLSVSDGLPPILSMEKERKDGKLWMELRDGLRLSWIVVNKKIKQAANLASWSPLGGQRHWPTDKDFVIRFGSVLSAKDILPCQVVECILIMKF RVIHTEGEGVQTTLNLTELSMQLEDMEGAHVNGRNSLLILKEALSCRRSKNHSEVLESCHLYSKAQSELREEKMKIESRLDRLCIVTGIAAFLTFWYCIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27310			F-box family protein (.1)		Potri.005G208200 [exp]	0	1
AT5G42370			Calcineurin-like metallo-phosp...		Potri.005G259700 [exp]	2.00	0.7294
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.013G028700 [exp]	2.23	0.7439
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Potri.007G018600 [exp]	3.00	0.7221
					Potri.015G131300 [exp]	6.32	0.7133
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Potri.004G013200 [exp]	9.48	0.6757	Pt-ATGLX1.1
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Potri.006G027700 [exp]	10.90	0.7031
AT1G27300			unknown protein		Potri.003G170700 [exp]	12.72	0.7056
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.014G071100 [exp]	13.07	0.6994
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.008G186500 [exp]	15.55	0.6962
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	16.24	0.6691

Compare expression of checked genes

Potri.005G208200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.