Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06080 87 / 8e-22 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 83 / 1e-20 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT1G78710 62 / 4e-13 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT1G60790 62 / 6e-13 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 61 / 1e-12 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT5G20590 60 / 2e-12 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G58600 60 / 3e-12 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 60 / 3e-12 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G49340 58 / 1e-11 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G06230 57 / 2e-11 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054400 [exp] 113 / 2e-31 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G203900 [exp] 89 / 1e-22 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.011G106300 [exp] 66 / 3e-14 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.018G133000 [exp] 63 / 2e-13 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.010G043300 [exp] 63 / 2e-13 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 63 / 2e-13 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 62 / 7e-13 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.016G059300 [exp] 60 / 2e-12 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 59 / 4e-12 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028025 [exp] 88 / 4e-22 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10003734 [exp] 86 / 2e-21 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 79 / 6e-19 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 75 / 1e-17 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 69 / 2e-15 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10030590 [exp] 64 / 4e-14 AT1G60790 226 / 7e-71 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10030900 [exp] 61 / 1e-12 AT1G60790 371 / 2e-127 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 61 / 1e-12 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10011932 [exp] 61 / 2e-12 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10004159 [exp] 60 / 2e-12 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Representative CDS sequence Show only first row Show all	>Potri.005G208301.1 pacid=42805596 polypeptide=Potri.005G208301.1.p locus=Potri.005G208301 ID=Potri.005G208301.1.v4.1 annot-version=v4.1 ATGTCAGCACGGAGAAAGGATGGCCACCCATCCGTGTACTATCTAGGATCAAGTATAGGTCCACCCTTCCTACACCGTCAAGACTGCAGCCATTGGTACC TGCCTGGTGTACCTGATTCCTGGAATGAGCTTCTTTATACGCTTCTTCTCAAGTGGGAGTCTGTTCATGCACAAAATCTAACAGAATCTTCTCAAGCTAC TCCGTGA
AA sequence Show only first row Show all	>Potri.005G208301.1 pacid=42805596 polypeptide=Potri.005G208301.1.p locus=Potri.005G208301 ID=Potri.005G208301.1.v4.1 annot-version=v4.1 MSARRKDGHPSVYYLGSSIGPPFLHRQDCSHWYLPGVPDSWNELLYTLLLKWESVHAQNLTESSQATP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Potri.005G208301 [exp]	0	1
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016000 [exp]	4.58	0.9477
					Potri.014G003451 [exp]	8.00	0.9254
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.001G435000 [exp]	8.36	0.9431
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.001G023900 [exp]	12.64	0.9141
					Potri.001G432333 [exp]	14.28	0.9206
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G020398 [exp]	14.38	0.9051
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429430 [exp]	17.66	0.9188
AT4G27190			NB-ARC domain-containing disea...		Potri.001G420000 [exp]	18.97	0.9133
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G022728 [exp]	19.89	0.9060
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.010G100900 [exp]	21.90	0.8837	NHX8.2

Compare expression of checked genes

Potri.005G208301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.