Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17970 229 / 3e-69 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46600 228 / 7e-69 Aluminium activated malate transporter family protein (.1) AT5G46610 225 / 4e-68 Aluminium activated malate transporter family protein (.1.2.3) AT1G08440 221 / 5e-67 Aluminium activated malate transporter family protein (.1) AT4G00910 211 / 3e-63 Aluminium activated malate transporter family protein (.1) AT2G27240 208 / 6e-62 Aluminium activated malate transporter family protein (.1) AT1G08430 207 / 2e-61 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT3G11680 205 / 7e-61 Aluminium activated malate transporter family protein (.1) AT3G18440 159 / 4e-43 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 153 / 6e-41 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054300 [exp] 652 / 0 AT5G46600 252 / 3e-78 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 245 / 4e-76 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 242 / 9e-75 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 240 / 5e-74 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 236 / 8e-73 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G144300 [exp] 234 / 1e-71 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.006G203100 [exp] 229 / 3e-70 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 228 / 7e-70 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 225 / 2e-68 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022030 [exp] 367 / 3e-124 AT5G46600 237 / 2e-72 Aluminium activated malate transporter family protein (.1) Lus10042571 [exp] 322 / 2e-107 AT5G46600 192 / 6e-56 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 234 / 2e-71 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 233 / 7e-71 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 225 / 1e-68 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10000898 [exp] 226 / 2e-68 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10021272 [exp] 224 / 4e-68 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 215 / 5e-65 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 209 / 1e-62 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 202 / 2e-59 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF13515 [poplar] [flax] FUSC_2 Fusaric acid resistance protein-like
Representative CDS sequence Show only first row Show all	>Potri.005G208500.1 pacid=42803362 polypeptide=Potri.005G208500.1.p locus=Potri.005G208500 ID=Potri.005G208500.1.v4.1 annot-version=v4.1 ATGGGCTCAGTTGTTATCCCTATCCCAGATGGAGATCAGGGATTTACTCATGATCTCAAACAGGAAAAGAAATTCCGAGTTTCTCTAAGTCCTGTTATTT CTTATGTCCAGAAAAATAGGGATACCATAAGAAAAGCTATTCACGCCATCAAAGTTGGAATTACTCTGGTTTTGGTTTCTCTTGTCTACTTCGTTGACAC TCTCTATAAAGAAGTTGGAGACGATAATGCGATGTGGGCTATAATGACTGTTGTGGTCATCTTTGAGTTCCATGCAGGAGCTACCCTTAGCAAGGGCTTG AGTCGTGGAATTGGGACTGTTTTAGGAGGCGGATTGGGATATTTAGCAGCCGTTTTAGGTCAGCAAGTTGGTGGTATCGGCAACCCTTTTGTCGTTGGTG TTTCTGTCTTTATTTTTGGTGGGGCAGCAACATACGCTAGACTGAATCCAAACATTAAGAAGAGATATGACTATGGAGTGATGATATTCATCCTCACATT CAATCTGGTTTCAGTATCCGGTTTACGTGAAGAGAATGTCATTGAAATAGCCCGCGAACGTCTCGTGATGATTGTTTTGGGCTTCGCCATCTGCATTTGC ATAAGCTTGTTTGTGTTTCCCATGTGGGCTAGCGATGAGCTTCATGATTCTATGGTATCCAAATTTGAAGGCCTTGCAAGCTCCATAGAAGGATGCATAG AGGAGTATTTCAGATTAGTCAATGAAAAGGAAAACCAGTCAGTTCAGCCGACTGCTAGTTTCAGGGACTGCATATCAGTGCTAAACTCCAAGGCAAAGGA TGAATCCTTGGTATATTTTGCGAAATGGGAGCCGTGGCATGGCAGATTTGGGCTATCCCATCCTTGGGACAAATACCAAAAGATTGGAGAGGTTCTTAGA GAATTGGCTGCGATCATTCTTTCACTTAAGGGTTCTCTTAATTCTCCCGAAGAGCCATTGCAAGCTTTGAGAGAGTCAATAAAAGAACCTTGTGAAGCAG CTGGGTCATCACTTACTTGGACTCTGAGAGAGCTTGGAGAGAGCATCATGAAAATGAGAAGGTGCCAGCCAGGGGCTTTCATGGTACCTAAGTTAAAATT AGTGAGACAAGAGCTTAGTCAGGTCATGTGTCCTTTCAAATTAGGGAAACTTGATAATGCTGAGGGATTTGCAGTAGCAAGCTTTGTGTTCACACTAATG GGGGTGGTAGAGAAGCTGGAAGATTTATCCAAGGAGGTGGAAGAGCTTGGAGAACTTGCTGGTTTCCTTCAAGGCTAA
AA sequence Show only first row Show all	>Potri.005G208500.1 pacid=42803362 polypeptide=Potri.005G208500.1.p locus=Potri.005G208500 ID=Potri.005G208500.1.v4.1 annot-version=v4.1 MGSVVIPIPDGDQGFTHDLKQEKKFRVSLSPVISYVQKNRDTIRKAIHAIKVGITLVLVSLVYFVDTLYKEVGDDNAMWAIMTVVVIFEFHAGATLSKGL SRGIGTVLGGGLGYLAAVLGQQVGGIGNPFVVGVSVFIFGGAATYARLNPNIKKRYDYGVMIFILTFNLVSVSGLREENVIEIARERLVMIVLGFAICIC ISLFVFPMWASDELHDSMVSKFEGLASSIEGCIEEYFRLVNEKENQSVQPTASFRDCISVLNSKAKDESLVYFAKWEPWHGRFGLSHPWDKYQKIGEVLR ELAAIILSLKGSLNSPEEPLQALRESIKEPCEAAGSSLTWTLRELGESIMKMRRCQPGAFMVPKLKLVRQELSQVMCPFKLGKLDNAEGFAVASFVFTLM GVVEKLEDLSKEVEELGELAGFLQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003000 [exp]	2.00	0.8714
AT3G57200			unknown protein		Potri.006G045500 [exp]	2.44	0.8593
AT3G25597			unknown protein		Potri.008G111500 [exp]	6.92	0.8421
AT4G27220			NB-ARC domain-containing disea...		Potri.001G404800 [exp]	6.92	0.7933
					Potri.003G105450 [exp]	7.14	0.7998
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	7.48	0.8061
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	7.74	0.8148	Pt-ATHK1.2
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	8.36	0.8179
					Potri.018G031850 [exp]	8.36	0.8419
AT1G59740			Major facilitator superfamily ...		Potri.003G000800 [exp]	10.95	0.7864

Compare expression of checked genes

Potri.005G208500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.