Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09820 296 / 2e-92 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G63650 194 / 1e-53 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 189 / 3e-51 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00480 139 / 1e-34 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G32640 101 / 4e-22 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 97 / 1e-20 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G12860 93 / 9e-20 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 90 / 2e-18 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G26744 89 / 3e-18 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT5G46760 87 / 9e-18 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054100 [exp] 1048 / 0 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G103600 [exp] 224 / 4e-64 AT5G41315 582 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G128000 [exp] 218 / 7e-62 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G083900 [exp] 209 / 2e-58 AT5G41315 464 / 5e-156 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G159400 [exp] 201 / 1e-55 AT5G41315 483 / 2e-163 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 107 / 3e-24 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 104 / 2e-23 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 101 / 4e-22 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 93 / 2e-19 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022032 [exp] 301 / 1e-94 AT4G09820 181 / 8e-51 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024631 [exp] 211 / 2e-59 AT1G63650 470 / 3e-159 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10032267 [exp] 209 / 1e-58 AT5G41315 487 / 2e-165 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042572 [exp] 194 / 3e-58 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004574 [exp] 103 / 1e-22 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 96 / 3e-20 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 94 / 1e-19 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 91 / 5e-19 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10032542 [exp] 89 / 3e-18 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10043199 [exp] 89 / 4e-18 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G208600.4 pacid=42805339 polypeptide=Potri.005G208600.4.p locus=Potri.005G208600 ID=Potri.005G208600.4.v4.1 annot-version=v4.1 ATGGCTACCCCGCCTAGTAGCCGCTTGCAGACTATGTTACAGGCTGCAGTGCAATCGGTTCAATGGACATACAGTCTCTTTTGGCAAATGTGTCCACAAC AAGGGATCTTAGTGTGGGGAGATGGGTATTACAATGGGCCAATCAAGACTAGAAAAACAGTGCAACCAATGGAGGTTACGACTGAAGAAGCCTCCTTGCA AAGGAGTCAGCAGCTTAGAGAGCTCTACGATTCATTATCTATAGGAGAGACCAACCAGCCAGCACGTCGACCTTGCGCCGCCTTGTCACCGGAGGACTTG ACGGAGACTGAGTGGTTTTATCTGATGTGTGTTTCCTTCTCTTTCCCTCCTGGTGGTGGGTTACCAGGAAAGGCCTACGCAAGGAGACGACACGTATGGC TTACTGGTGCAAACGAGATTGATAGCAAAACTTTCTCTAGAGCAATCCTTGCCAAGAGTGCTCGTGTACAGACTGTGGTGTGCATCCCTCTTCTCGATGG TGTTGTTGAATTTGGCACAACAGACAAGGTTCAAGAGGATCTTGGGCTTATCCAACACGTAAAAACCTTCTTTAGTGACCACCACCACCGCCACCTTACT CCCCCAAAACCAGCTTTATCCGAGCACTCCACTTCCAGCCCTGCCACCTCCTCTCATGACCACCCTCGTTTCCATCCTCCACCCATTCCTCCCTTCTATG TGGCTGCAGAGCCATCAGCCAATGCCGAACAAATTGATGAGGATGAAGAAGAAGATGAGGAGGAGGAGGAACATGATTCAGACTCAGAAGCCGAAACCAG TCGCGATGATCACTTAGAACCGAGACAAGCTCAAAACCCTCATCAAGTTGTAGCAGCTGAGCCGAGCGAGTTGATGCAACTTGAGATGTCTGAGGATATC AGGCTTGGTTCTCCTGATGATGGGTCTAATAACTTGGACTCGGATTTTCCTTTGACTGGTCCAGACAACTCGATGGATCACCGGAGCCGAGCTGACTCGT ATAAAGCGGAGTCCGCTCGGAGGTGGACAATGTTGCAAGACAACCCTTTCAGTGGCAACCTTCAGCCATCAGCTTCAGGACCACCTCCGCTAGAAGACTT GGCGCAAGAGGACACGCACTACTCCCAAACCATATCGACCATCCTCCAAAGCCAACCGGTATGGCTGGCAGCAGAGCCATCGTCCATTGCATACGAGGCA CGGTACCACCAATCAGCCTTTTCCAGGTGGACAAACCGCTCCGATCACCTCTTCCACGTGTCAGTTGAGACCACCTCTCAGTGGCTCCTAAAATACATTC TCTTTAGCGTACCACACCTCCACAGCAAAAGCCGCGAAGACAATTCCCCAAAGTCACGTGACGGTGAAGCAGCCAGTCGGTTCCGCAAGGGGACCCCACA GGATGAGCTCAGTGCCAATCACGTGCTAGCAGAACGACGCCGGAGAGAGAAGTTAAACGAGAGGTTTATAATGCTAAGGTCGCTGGTGCCCTTCGTGACC AAAATGGACAAAGCATCAATATTAGGGGACACAATTGAATACGTGAAGCAACTCCGTCAAAAAATCCAGGATTTGGAGACGCGTAATAAACAGATGGAGA GTGAGCAACGCCCGAGATCGGTGGACCGTCCACAGAGGACTTCTACTTCCGATAGTTTGAAAAAGCAAAAGAGTGGGGTCACAGTGGTGGATCGGGCGAG GAGTCTTGGGCCTCTGCCAGATAAGAGGAAGATGAGGGTCGTAGAGGATAGTGCTGGTGGTGGTGCCAAGCCCAAAACGGTGGGTGCCTTGCCACAGCCA GAGCCGGTGGTCCATAAGGAGCTGGAGACCAGCGTAGAGGTGTCGATAATAGAGAGTGACGCATTGTTAGAGTTGGAATGTGGTTTTAGAGAGGGGCTTT TATTAGACATAATGCAAATGCTAAGGGAGCTCAGGATAGAAACTATTGCGGTTCAGTCTTCTTTGAACAATGGGATCTTTGCAGGGGAATTGAGGGCCAA GGTGAAGGAGAATGTTAATGGAAAGAAGGTGAGCATTGTGGAGGTGAAGAGAGCAATACATAAAATAATACCCCATGATTGA
AA sequence Show only first row Show all	>Potri.005G208600.4 pacid=42805339 polypeptide=Potri.005G208600.4.p locus=Potri.005G208600 ID=Potri.005G208600.4.v4.1 annot-version=v4.1 MATPPSSRLQTMLQAAVQSVQWTYSLFWQMCPQQGILVWGDGYYNGPIKTRKTVQPMEVTTEEASLQRSQQLRELYDSLSIGETNQPARRPCAALSPEDL TETEWFYLMCVSFSFPPGGGLPGKAYARRRHVWLTGANEIDSKTFSRAILAKSARVQTVVCIPLLDGVVEFGTTDKVQEDLGLIQHVKTFFSDHHHRHLT PPKPALSEHSTSSPATSSHDHPRFHPPPIPPFYVAAEPSANAEQIDEDEEEDEEEEEHDSDSEAETSRDDHLEPRQAQNPHQVVAAEPSELMQLEMSEDI RLGSPDDGSNNLDSDFPLTGPDNSMDHRSRADSYKAESARRWTMLQDNPFSGNLQPSASGPPPLEDLAQEDTHYSQTISTILQSQPVWLAAEPSSIAYEA RYHQSAFSRWTNRSDHLFHVSVETTSQWLLKYILFSVPHLHSKSREDNSPKSRDGEAASRFRKGTPQDELSANHVLAERRRREKLNERFIMLRSLVPFVT KMDKASILGDTIEYVKQLRQKIQDLETRNKQMESEQRPRSVDRPQRTSTSDSLKKQKSGVTVVDRARSLGPLPDKRKMRVVEDSAGGGAKPKTVGALPQP EPVVHKELETSVEVSIIESDALLELECGFREGLLLDIMQMLRELRIETIAVQSSLNNGIFAGELRAKVKENVNGKKVSIVEVKRAIHKIIPHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	0	1
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	1.41	0.9184
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	3.00	0.9226
AT5G36210			alpha/beta-Hydrolases superfam...		Potri.002G128700 [exp]	3.46	0.9150
AT3G49055			unknown protein		Potri.015G146100 [exp]	4.47	0.9132
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	5.29	0.9146
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	8.48	0.8964
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	8.54	0.8625
AT5G20090			Uncharacterised protein family...		Potri.001G333902 [exp]	8.66	0.8937
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.010G094300 [exp]	10.48	0.8716	KUP6.2
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	10.95	0.8771

Compare expression of checked genes

Potri.005G208600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.