Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02820 654 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02150 289 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 259 / 2e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 250 / 5e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G60770 247 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 237 / 9e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 235 / 9e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 231 / 1e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 214 / 3e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 169 / 7e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050300 [exp] 314 / 4e-101 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 308 / 1e-98 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 298 / 5e-95 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 278 / 1e-87 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 263 / 4e-82 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 264 / 5e-82 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 253 / 3e-78 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132700 [exp] 246 / 3e-75 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G194400 [exp] 244 / 1e-74 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042574 [exp] 621 / 0 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022033 [exp] 538 / 0 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008724 [exp] 274 / 1e-85 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 273 / 2e-85 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 266 / 1e-82 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 265 / 1e-82 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 264 / 8e-82 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 244 / 3e-74 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005855 [exp] 240 / 5e-73 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 237 / 8e-72 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G208900.2 pacid=42802482 polypeptide=Potri.005G208900.2.p locus=Potri.005G208900 ID=Potri.005G208900.2.v4.1 annot-version=v4.1 ATGTTGGTGCGGAACGTGCGGGGAACCCTTGCAGCCGCCGCGCGGCAGTTCTCGGCTGCAGCAGTGACGGAGAAGGGTATTGTTAGCGGAGGAGAAGGGA AAAAGAGTGGCGGTGGAGACACGCTTGGAAGGAGGCTGTTTAGTTTGGTGTATGGAAAACGGAGTGCAGTAATAACAATAAGGAAATGGAAGGAAGAGGG ACACAATGTCCGAAAGTACGAGCTGAACCGGATTGTTAGAGAGCTCCGTAAGCTGAAGCGGTACAAGCACGCCCTCGAGGTATGTGAATGGATGACAAAG CAGTCTGATATAAAGCTTGTACCGGGTGATTATGCTGTTCATTTGGACTTGATTGCGAAAATTCGTGGTCTAAATAGTGCAGAGAAGTTCTTCGAAGATA TTCCTGATAAAATGAGGGATTATCAAGCATGTTCAGCTCTTCTCCATGTTTATGTCCAGAATAAATCGATCTCCAAAGCGGAGGCTTTGATGGAGAAAAT GTCTGAATGTGGGTTCTTGAAGAATGCTCTTCCTTATAACCATATGCTATCAGTGTATGTTGCAAATGGGCAGTTGGAAAAGGTCGCGGAGATCATTCAA GAGTTAAAGAAAAAGACTTCACCTGATGTTGTTACTTATAATATGTGGTTAACTGCGTGTGCCTCGCAAAACGATGTGGAAACAGCAGAGAAAGTCTTTA TGGAGCTGAAGAAGTCAAAATTAGATCCAGATTGGGTAACGTATAGTACGTTAACCAACTTGTATATCAAAAAGGAATGCCTTGAAAAAGCAGCGTATAC TCTGAAGGAAGTGGAGAAAAGAGCTTCAAAGAAAAATCGAGTCACCTACTCCTCTCTTCTCAGTTTGCATGCGAACATGAAGGATAAGGATGGGCTACAT CGAACCTGGAATAAGATGAAGTCGGTCTTTAATAAAATGAATGATGCTGAATATAATTGTATGATATCTTCACTTGTTAAACTTGGGGAGTTTGGAGGAG CAGAGAATCTCTACAATGAGTGGGAATCAGTTTCTGCAACTCGAGATTCTAGGGTTTCAAACATAGTTCTTGCTAGTTATATCAATAGAAATCAGATGGA AGACGCTGAAAATTTTTGCCAGCGCATGGTGCAAAAGGGCATCACTCCCTGTTATACTACCTGGGAGCTTCTTACTTGTGGTCATCTGAAAACGGAGCAG ATGGAAAAGGTTTTAGAGAATTTTAAGAAAGCCTTATGTAGTGTAAGGAAATGGACTCCTGATAAAAGGTTGATTGGAGATATATTCAAGAATCTGGAGG AGCGGGGCGACATTGAAGGAGCAGAGAAACTACTGGTTATACTTCGGGATGCTGGCCATGTGAGTACCATGATATATAATTCTCTTCTACGAACATATGC GAAAGCAGGTAAGATGCCAGTTATAATTGAAGAGCGTATGCAGAAGGATAATGTGGAGTTAGATGACGAAACACATAAGCTCATACAGACAACTAGCACC ATGTGTGTGAGTGAAGTTTCAAGTTTGCCTATTCTGAAATAA
AA sequence Show only first row Show all	>Potri.005G208900.2 pacid=42802482 polypeptide=Potri.005G208900.2.p locus=Potri.005G208900 ID=Potri.005G208900.2.v4.1 annot-version=v4.1 MLVRNVRGTLAAAARQFSAAAVTEKGIVSGGEGKKSGGGDTLGRRLFSLVYGKRSAVITIRKWKEEGHNVRKYELNRIVRELRKLKRYKHALEVCEWMTK QSDIKLVPGDYAVHLDLIAKIRGLNSAEKFFEDIPDKMRDYQACSALLHVYVQNKSISKAEALMEKMSECGFLKNALPYNHMLSVYVANGQLEKVAEIIQ ELKKKTSPDVVTYNMWLTACASQNDVETAEKVFMELKKSKLDPDWVTYSTLTNLYIKKECLEKAAYTLKEVEKRASKKNRVTYSSLLSLHANMKDKDGLH RTWNKMKSVFNKMNDAEYNCMISSLVKLGEFGGAENLYNEWESVSATRDSRVSNIVLASYINRNQMEDAENFCQRMVQKGITPCYTTWELLTCGHLKTEQ MEKVLENFKKALCSVRKWTPDKRLIGDIFKNLEERGDIEGAEKLLVILRDAGHVSTMIYNSLLRTYAKAGKMPVIIEERMQKDNVELDDETHKLIQTTST MCVSEVSSLPILK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02820			Pentatricopeptide repeat (PPR)...		Potri.005G208900 [exp]	0	1
AT2G38450			unknown protein		Potri.010G182400 [exp]	1.00	0.7256
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Potri.005G228200 [exp]	2.82	0.6971
AT4G15520			tRNA/rRNA methyltransferase (S...		Potri.008G198200 [exp]	3.87	0.6711
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.014G123700 [exp]	6.00	0.6823
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.016G093944 [exp]	18.89	0.6609
AT2G45520			unknown protein		Potri.014G072400 [exp]	21.67	0.6515
AT1G48170			unknown protein		Potri.008G099700 [exp]	22.49	0.6377
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	24.37	0.6517
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	29.59	0.6692	Pt-CYCD1.3
AT5G60390			GTP binding Elongation factor ...		Potri.006G130900 [exp]	39.79	0.6116

Compare expression of checked genes

Potri.005G208900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.