Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63150 848 / 0 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) AT5G27540 795 / 0 MIRO1, EMB2473 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) AT3G05310 623 / 0 MIRO3 MIRO-related GTP-ase 3 (.1) AT4G35020 51 / 4e-07 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT2G44690 49 / 2e-06 ARAC9, AtROP8, ROP8 RHO-RELATED PROTEIN FROM PLANTS 8, Arabidopsis RAC-like 9 (.1) AT1G20090 46 / 3e-05 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT1G75840 45 / 4e-05 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT3G51300 44 / 0.0001 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT4G28950 43 / 0.0003 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) AT2G17800 42 / 0.0003 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023100 [exp] 851 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.005G033700 [exp] 837 / 0 AT5G27540 937 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.009G134600 [exp] 48 / 4e-06 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 46 / 2e-05 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.013G123800 [exp] 45 / 5e-05 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 45 / 6e-05 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G242000 [exp] 44 / 0.0001 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.014G051800 [exp] 44 / 0.0001 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.002G019500 [exp] 44 / 0.0002 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022034 [exp] 967 / 0 AT3G63150 891 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10042575 [exp] 966 / 0 AT3G63150 892 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10015186 [exp] 840 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10031508 [exp] 838 / 0 AT5G27540 951 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10004474 [exp] 823 / 0 AT5G27540 970 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10029934 [exp] 822 / 0 AT5G27540 971 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10039899 [exp] 51 / 6e-07 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10002181 [exp] 49 / 3e-06 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 49 / 3e-06 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10033131 [exp] 45 / 5e-05 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family CL0023 [poplar] [flax] PF08355 [poplar] [flax] EF_assoc_1 EF hand associated CL0220 [poplar] [flax] EF_hand PF08356 [poplar] [flax] EF_assoc_2 EF hand associated
Representative CDS sequence Show only first row Show all	>Potri.005G209000.3 pacid=42805502 polypeptide=Potri.005G209000.3.p locus=Potri.005G209000 ID=Potri.005G209000.3.v4.1 annot-version=v4.1 ATGCCAGGCGGGAATTCTGCTGCCGCCGGCGGGAAGACCGGCGTGAGAATCGTAGTAGTCGGAGACCGTGGAACAGGAAAATCGAGTTTGATTGCGGCGG CAGCCACCGAATCTTTCCCGGAAAACCTATCTCCCGTGCTTCCACCCACTCGCCTCCCTGCCGATTTCTTCCCCGATCGCGTTCCTATCACTATCATCGA CACTTCTGCAAGCTTGGAGAGTAGAGGAAAGCTAAATGAAGAATTGAAGCGAGCTGATGTGATTATATTAACTTACGCGTGTGATTTTCCGTTGACGCTT ACTCGTTTGAGTAGTTTTTGGCTTCAGGAATTTCGTCGATTAGAGGTGAAGGTACCGGTGATAGTGGTGGGTTGCAAAGTAGATTTGAGAGATGAGAACC AGCCGATTAGCCTCGAGCCGGTTATGGGACCAATCATGCAACAGTATAGGGAGATTGAGACCTGTATAGAGTGCTCTGCTGTTACCCTTATGCAGGTCCC TGACGTTTTCTATTATGCTCAAAAAGCTGTACTTCATCCAACAGCTCCTTTGTTTGATCAAGACACTCAAGCTTTGCAACCCCGATGTATAAGGGCATTG AGAAGGATATTTATTCTATGTGATAGTGACATGGATGGTGCACTCAATGATGCAGAGTTGAATGATTTTCAGGTTAAATGTTTTGACGCTCCACTGCAGC CTGCTGAAATAGTGGGTGTGAGAAGAGTTGTGCAAGAAAAGAAGAAAGAAGGGGTCAACGACCTGGGGCTTACCCTTGAAGGGTTCCTGTTTCTCCATTC TCTTTTTATAGATAAAGGGCGCCTTGAAACTACTTGGGCTGTTTTGAGAAAATTTGGCTACGGCAATGATTTAAAACTCAGAGATGATTTTCTTCCAGCT CCATCAAAGGATGCTCCTGATCAGAGTGTAGAGTTGACAATTGAAGCTGTAGAGTTTGTTCGTCGGGTGTTCCGATTGTTTGATACCGATAATTATGGAG CCTTACGACCTACTGAGCTTGATGAGCTATTTTCAACTGCTCCAGAAAATCCTTGGGGTGAGGCTCCTTACAAGGATGCTGCAGAGAGAACCACACAGGG AAATTTAACTCTGAAGGGTTTTCTATCTGAGTGGGCTCTTATGACCATGCTGGATCCACGAGGTAGTTTGGCTAATTTGCTATACATTGGATATGGAGGA AATCCTGCTTCAGCACTTCATGTTACTCGGAGAAGATCCGTTGATCGTAAGAAGCAGCAAACAGAAAGAAATGTTTTCCACTGCTTAGTTTTTGGCCCTA AAAATGCTGGAAAGTCCACTCTGTTGAATTCATTCTTAGGAAGGCCATTCTCAGAAAGTCATGAACTGATAGCTGGTGAGCGCTATGCAGTGAATGTTGT TGACCAGCATGGGTTGTCCTTGCAGGGGAATAAGAAGACTCTTATTTTGCGAGAGATACCAGAAGACGGAGTGAAAAAATTTCTATCCAATAAAGAATCT CTGTCGTCCTCTGATGTTGCTGTATTTGTTTATGACAGTTCGGATGAATATTCATGGAAAAGGTCAAATGAACTTCTTGTAGAGGTTGCTAGGCATGGAG AAGAAAGTGGTTATGGGGTGCCTAGTCTCATTATCGCTGCTAAGGATGACTTGGATCCACATCCAATGAGTGTGCAAAAATCAGTAAGGGTTTGCCAAGA GCTGGGAATAGGGGCTTCTATTCCTATCAGCTCAAAGCTCGGAGATATGAATAATGTTTTCTGCAGGATCTTAAGTGCCGCCGAACACCCTCATTTGAAC ATTCCTGAAACTGTGGCCGGGAGGAAACGCAAGCAGTTCCACCAGCTTGTCAATCACTCTCTCCTGTTTATGTCAGTTGGCGCTGCTTTTGCTGTTGCTG GAATGGCAGCTTTTCGTGCCCACAGTGGAAGGAGAAATTCTCCTAGCTAG
AA sequence Show only first row Show all	>Potri.005G209000.3 pacid=42805502 polypeptide=Potri.005G209000.3.p locus=Potri.005G209000 ID=Potri.005G209000.3.v4.1 annot-version=v4.1 MPGGNSAAAGGKTGVRIVVVGDRGTGKSSLIAAAATESFPENLSPVLPPTRLPADFFPDRVPITIIDTSASLESRGKLNEELKRADVIILTYACDFPLTL TRLSSFWLQEFRRLEVKVPVIVVGCKVDLRDENQPISLEPVMGPIMQQYREIETCIECSAVTLMQVPDVFYYAQKAVLHPTAPLFDQDTQALQPRCIRAL RRIFILCDSDMDGALNDAELNDFQVKCFDAPLQPAEIVGVRRVVQEKKKEGVNDLGLTLEGFLFLHSLFIDKGRLETTWAVLRKFGYGNDLKLRDDFLPA PSKDAPDQSVELTIEAVEFVRRVFRLFDTDNYGALRPTELDELFSTAPENPWGEAPYKDAAERTTQGNLTLKGFLSEWALMTMLDPRGSLANLLYIGYGG NPASALHVTRRRSVDRKKQQTERNVFHCLVFGPKNAGKSTLLNSFLGRPFSESHELIAGERYAVNVVDQHGLSLQGNKKTLILREIPEDGVKKFLSNKES LSSSDVAVFVYDSSDEYSWKRSNELLVEVARHGEESGYGVPSLIIAAKDDLDPHPMSVQKSVRVCQELGIGASIPISSKLGDMNNVFCRILSAAEHPHLN IPETVAGRKRKQFHQLVNHSLLFMSVGAAFAVAGMAAFRAHSGRRNSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	0	1
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	3.00	0.7991
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	3.00	0.8103	Pt-ARF1.11
AT5G51150			Mitochondrial import inner mem...		Potri.012G113700 [exp]	4.47	0.8074
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	5.56	0.7618
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	7.48	0.8083
AT5G61910			DCD (Development and Cell Deat...		Potri.015G106400 [exp]	8.83	0.8066	Pt-BON1.2
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.001G103100 [exp]	8.83	0.8374
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063201 [exp]	12.96	0.7906
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.006G147800 [exp]	18.43	0.7960
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	18.97	0.8134

Compare expression of checked genes

Potri.005G209000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.