Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03170 89 / 6e-21 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT4G02810 79 / 5e-17 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT5G19260 60 / 3e-10 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT1G54740 50 / 7e-07 Protein of unknown function (DUF3049) (.1) AT3G06020 45 / 2e-05 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT5G22090 43 / 0.0002 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053400 [exp] 349 / 4e-121 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 160 / 6e-47 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 154 / 8e-45 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 61 / 2e-10 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.004G144000 [exp] 52 / 3e-08 AT5G22090 45 / 6e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 52 / 2e-07 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.005G037600 [exp] 51 / 3e-07 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.013G027100 [exp] 47 / 5e-06 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.002G092000 [exp] 42 / 0.0002 AT1G22110 130 / 2e-36 structural constituent of ribosome (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042576 [exp] 110 / 2e-28 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 109 / 3e-28 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 104 / 3e-26 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 86 / 3e-19 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 84 / 1e-18 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 79 / 4e-17 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 74 / 5e-15 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 55 / 3e-08 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 54 / 4e-08 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10035353 [exp] 45 / 3e-05 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.005G209100.1 pacid=42805679 polypeptide=Potri.005G209100.1.p locus=Potri.005G209100 ID=Potri.005G209100.1.v4.1 annot-version=v4.1 ATGTCCTCCTCAAGCTCCTGTCCAGGCCTCCAATCATGCCTAGAGCCGGTCTCCCTCGTAGAACCACGTGTTTTGAGGATCAAATTGGCTCCATCCAAAT CCAATGATTCTTGCTCCTCAACAAGTGGCAAGCCTTTTGTCACTGACTCAGACAAAAATGCTGACATGGGCGGCTGGAGTTTCCTCCAGTCTATTGCTAA CAATACCTCTCAGACCACCAAAGAGAACGACAAAGTCTACGTCCCTCCGAATTTTAAGCGCTCTTCTTCTATGCTCAACGAAAAGAGCCTGGAAATGTGT ACCGAAAGCTTGGGGAGTGAAACTGGCAGCGAGATGAGTGAAAGCAGCGACGACATGGCTGTCCTTCCATTAGAAAATGTGAATTATGAGACTAGAGAAA CACCAAAATCGCGTGAAGCAAGAAGAACGAGTCGAAGTGTTAGCTTCCCACCTCCTTTGAGCTCGATTAGTGGCTCCAACAATGTTCGAGTGAGGCCTCA CCGAGAAGGTGGAAGGCTAGTCCTGGAAGCAGTGACCATCTCTTCTTGCCATGTTTATTTACATGCAGAGAGAACCGATGGCCGGCTCCGGCTACATTTG ATGAATCACTGCTCTTCTAATAACTTTGACAATGAAGAGGAAGAAGCAGAAGCAGAGTCTGGTGAGGAAATTGTAGTTGAAGAAGACGGTGATGATGATC AAAGTGGAGATAATGAAGCTGAGGGTGGTGATGGTATTTGGGGAGAGGAGTTGGAGGGAAGTAGTGTAAATACTGGGGGTGAAATGGGGATGGGGAAATT GGCTAGACCAGGAAGGTGCAAGGAAGGTGGGAGCAGCAGCAAAAGCTTGCTTAATTGGGAGCCATTTTGGGTGGCTACTTGA
AA sequence Show only first row Show all	>Potri.005G209100.1 pacid=42805679 polypeptide=Potri.005G209100.1.p locus=Potri.005G209100 ID=Potri.005G209100.1.v4.1 annot-version=v4.1 MSSSSSCPGLQSCLEPVSLVEPRVLRIKLAPSKSNDSCSSTSGKPFVTDSDKNADMGGWSFLQSIANNTSQTTKENDKVYVPPNFKRSSSMLNEKSLEMC TESLGSETGSEMSESSDDMAVLPLENVNYETRETPKSREARRTSRSVSFPPPLSSISGSNNVRVRPHREGGRLVLEAVTISSCHVYLHAERTDGRLRLHL MNHCSSNNFDNEEEEAEAESGEEIVVEEDGDDDQSGDNEAEGGDGIWGEELEGSSVNTGGEMGMGKLARPGRCKEGGSSSKSLLNWEPFWVAT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Potri.005G209100 [exp]	0	1
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	8.94	0.8964	ERL1.2
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	9.48	0.9002
AT1G78170			unknown protein		Potri.005G165300 [exp]	12.44	0.9052
AT1G31330		PSAF	photosystem I subunit F (.1)		Potri.003G148900 [exp]	12.96	0.8928
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.012G097400 [exp]	15.42	0.7984	PPD3.2
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	17.40	0.8969
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	18.89	0.8876	Pt-ACR4.2
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.016G072900 [exp]	18.97	0.8859
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	22.58	0.8950
					Potri.002G252400 [exp]	22.73	0.8846

Compare expression of checked genes

Potri.005G209100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.