Plant FIBer expression Database

Potri.005G209200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03160 993 / 0 FZL FZO-like (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G053332
[exp]
350 / 1e-113 AT1G03160 278 / 2e-88 FZO-like (.1.2)
Potri.002G053366
[exp]
265 / 8e-83 AT1G03160 195 / 7e-58 FZO-like (.1.2)
Potri.004G230600
[exp]
44 / 0.0005 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014666
[exp]
1134 / 0 AT1G03160 1027 / 0.0 FZO-like (.1.2)
Lus10000656
[exp]
1118 / 0 AT1G03160 1021 / 0.0 FZO-like (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01926 MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence
>Potri.005G209200.1 pacid=42803186 polypeptide=Potri.005G209200.1.p locus=Potri.005G209200 ID=Potri.005G209200.1.v4.1 annot-version=v4.1
ATGATACCTCTCCTCTCCCTCCACTCCCCAAAGCCTTCCCTTTTCCTCACCCATTTCCTTCCTCACCTTTCCACTCCTCTCCCTCGCTTCAAATCCCCTC
CTCACCGAACCCACCATTTCCCTATCCACTCCTTCCCGAACAACCAACAACAACAGCAGCCCGCCAATCAAAACTTGTCAAATCAACAACCAAGAACCCT
TTTCCCTGGCGGTTACAAACGCCCCGAAATTAAAGTCCCCAACATCGTCCTCCAGCTGGACCCGGAGGATGTCATTCGTGGCGGAAGTGAGGCGTTGGAT
TTGATTGATAAGGCTGTGTCTAAGTCGGTTGGGATTGTTATTCTCAATGGCAGCATCGGGGGTGGTGGCAGCGGAAAGAGCCTTTACGAGGCGGCCTGTT
TGGTGAATTCAGTGGTCAGAGATCGTGCTTATTTGTTGATCGGAGAACGTGTTGATATAGCCACTGCTGTTAATGCTAGTGGTGTTGTGCTGTCTGATCA
AGGGCTTCCTGCCCTTGTGGCAAGAAATATGATGATGGGTTCTCGAACTGAATCAGTTGTTCTACCTTTGGTAGCCAGGATTGTGCAGACACCAAATGCT
GCATTAAATGCGTCTAATTCTGAAGGTGCTGATTTTCTTATATATGTTCATGGCCCAGAGGAAGATTTTGATGTAGAAATGAGCCCTGGATTCGGGAATG
TGAAGATACCAATCTTTGTCCTCAATGCTTCACGTGGGGAGGCCACATTGTCGGTGGGGGCATCAAAATTTCTGAAAACCGGTGCTAGTGGTTTAGTTCT
GTCATTGGAAGATTTGAGGTTATTTAGCGATGATGCTTTGAGTCAGATGTTTGACACTCTGAGTGCAACCGGTAAAAACTTTCAGGATGACCTTGAAAGC
TTCAGTAAGCTCAAATCTATGGATATGGAAAATGATATTCATGAAAAAACAACGGTGGCAGGCTTTGTTAAACTGGAGGATAGAGAAAAACAGCTCATAG
AAAAAGAGAGATCAATATTGCTTGAAGCTATTGATGTTATCCAGAAAGCTAGTCCTCTGATGGGGGAGCTTTCACTTTTCATTGATGCGGTTTCTCAGAT
TGACGAGCCATTTTTACTGGCTATAGTGGGTGAGTTTAACTCTGGGAAATCAACTGTTATTAATGCACTTCTTGGAAAAAGATACCTTAATGAGGGTGTT
GTTCCTACAACAAATGAGATCACTTTCTTACGCTACTCCAAGAGTGATTCTGAAGAGCAACAACGTTGTGAAAGGCATCCAGATGGTCAATATATATGCT
ACCTTCCAGCTCCAATTCTTAAAGAAATGAATATTGTTGACACACCAGGGACTAATGTCATTCTCCAAAGGCAACAGCGTCTTACTGAAGAATTTGTGCC
TCGTGCAGATTTGCTTCTTTTTGTTATTTCCGCTGACAGGCCATTAACTGAAAGTGAGGTTTCTTTTCTTCGTTATACTCAACAGTGGAAGAAGAAAGTT
GTTTTCGTGTTAAATAAATCTGACCTCTACAGGAATTCCAGTGAGCTCGAGGAAGCTATGTTGTTCATTAAGGAGAATACAAGGAAATTGCTGAAAACCA
ATGATGTGATATTATATCCTATCTCTGCTCGGTCTGCTCTTGAAGCAAAACTGTCAGCTTCTTCTGACCTTGGAAAAGATTACACAGAATTATCAGTTTC
AAAATCTCATTTGAAAATCTCTAGATTCTATGAACTTGAACAGTTCTTGTATAGTTTTTTAGATGCCTCAACAACCACAGGAATGGAAAGAGTAAGGCTT
AAACTTGAAACCCCAATTGCAATTGCTGAACGTCTACTTTCTGCCTGTGAAACTCTTGTGAAACAAGATAGCCAATTAGCCAAGCAGGATCTAACCTCCG
CAACAGAACTGATTGATAGTGTGAAAGAGTATGCAATAAAGATGGAAAATGAGAGCATCTCTTGGAGAAGAAAAACTATGTCACTGATTGATGCCACAAA
ATCTCGTGTTTTGGAGCTCATAGAATCGACCCTACAATTATCAAATCTTGATCTTGTTGCTTCATATATATTCAGAGGGGAAAAGTCTGCTACAATGCCA
GCCACCTTAAAGATTCAAAATGATATAATTGGTCCTGCACTTACAGATGCACAAAAATTGCTTGGAGAATACCTGAAATGGTTACAATCAAATAGTGCTA
ATGGAGGAAAACTATACAAAGAACAATTTGAAAAACGATGGACTTCAATTACCTATCCAACCTCCCAGATACATTTAGAGACCCATGATTTGGCGAAAAA
AGTTGACCTCAGCATTAGAGTGATAGAGAACCTCAGTGCCGGGGCCACTTCCAAGCTATTTGAAAAGCAAATACGTGAAGCGTTCTTGGGGACTTTTGGC
GGATTAGGAGCTGCTGGTTTATCTGCCTCACTTCTGACATCAGTACTGCCTACTACTTTAGAAGATCTTCTTGCTCTCGGCCTTTGTTCTGCTGGAGGGT
TCATAGCAATTTCCACTTTCCCAGTCCGTAGGCAAGCGATTGTAGACAAGGTAAATAAGATTGCAGATGGCCTTGCACGTGAAGTTGAAGAAGCTATGCA
GAATGATCTCATGGAAACTGTTGGAAATTTGGAGAACTTTGTAAAAACTATTGGCAAGCCTTATCAAGATGCAGCACAAGAAAGACTGGACAAACTTTTA
GATCTTCAAGAAGAACTATCAAATGTTGATAAAAAACTTAGAACACTTCGCATTGAAATACAGAATGTTCATTTATCATGA
AA sequence
>Potri.005G209200.1 pacid=42803186 polypeptide=Potri.005G209200.1.p locus=Potri.005G209200 ID=Potri.005G209200.1.v4.1 annot-version=v4.1
MIPLLSLHSPKPSLFLTHFLPHLSTPLPRFKSPPHRTHHFPIHSFPNNQQQQQPANQNLSNQQPRTLFPGGYKRPEIKVPNIVLQLDPEDVIRGGSEALD
LIDKAVSKSVGIVILNGSIGGGGSGKSLYEAACLVNSVVRDRAYLLIGERVDIATAVNASGVVLSDQGLPALVARNMMMGSRTESVVLPLVARIVQTPNA
ALNASNSEGADFLIYVHGPEEDFDVEMSPGFGNVKIPIFVLNASRGEATLSVGASKFLKTGASGLVLSLEDLRLFSDDALSQMFDTLSATGKNFQDDLES
FSKLKSMDMENDIHEKTTVAGFVKLEDREKQLIEKERSILLEAIDVIQKASPLMGELSLFIDAVSQIDEPFLLAIVGEFNSGKSTVINALLGKRYLNEGV
VPTTNEITFLRYSKSDSEEQQRCERHPDGQYICYLPAPILKEMNIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTESEVSFLRYTQQWKKKV
VFVLNKSDLYRNSSELEEAMLFIKENTRKLLKTNDVILYPISARSALEAKLSASSDLGKDYTELSVSKSHLKISRFYELEQFLYSFLDASTTTGMERVRL
KLETPIAIAERLLSACETLVKQDSQLAKQDLTSATELIDSVKEYAIKMENESISWRRKTMSLIDATKSRVLELIESTLQLSNLDLVASYIFRGEKSATMP
ATLKIQNDIIGPALTDAQKLLGEYLKWLQSNSANGGKLYKEQFEKRWTSITYPTSQIHLETHDLAKKVDLSIRVIENLSAGATSKLFEKQIREAFLGTFG
GLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGFIAISTFPVRRQAIVDKVNKIADGLAREVEEAMQNDLMETVGNLENFVKTIGKPYQDAAQERLDKLL
DLQEELSNVDKKLRTLRIEIQNVHLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03160 FZL FZO-like (.1.2) Potri.005G209200
[exp]
0 1
AT5G53170 FTSH11 FTSH protease 11 (.1) Potri.015G020700
[exp]
2.82 0.9564
AT5G49030 OVA2 ovule abortion 2, tRNA synthet... Potri.010G014500
[exp]
3.16 0.9567
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Potri.002G068400
[exp]
3.46 0.9425
AT4G33630 EX1 EXECUTER1, Protein of unknown ... Potri.017G043100
[exp]
3.46 0.9334
AT3G59780 Rhodanese/Cell cycle control p... Potri.013G128300
[exp]
5.29 0.9374
AT1G68830 STN7 STT7 homolog STN7 (.1) Potri.010G129532
[exp]
6.16 0.9108
AT5G09820 Plastid-lipid associated prote... Potri.001G309300
[exp]
7.07 0.9338
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Potri.014G170300
[exp]
8.71 0.9261
AT1G64430 Pentatricopeptide repeat (PPR)... Potri.001G090800
[exp]
9.16 0.9313
AT4G18240 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SY... Potri.001G351800
[exp]
10.24 0.9134

Potri.005G209200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.