Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02800 291 / 3e-97 unknown protein AT5G01970 121 / 3e-31 unknown protein AT1G30050 114 / 9e-29 unknown protein AT2G30530 96 / 7e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053100 [exp] 560 / 0 AT4G02800 276 / 3e-91 unknown protein Potri.006G111900 [exp] 122 / 5e-31 AT5G01970 352 / 2e-118 unknown protein Potri.016G141300 [exp] 122 / 7e-31 AT5G01970 353 / 2e-119 unknown protein Potri.019G132300 [exp] 105 / 8e-25 AT2G30530 253 / 9e-80 unknown protein Potri.013G160100 [exp] 103 / 2e-24 AT2G30530 266 / 8e-85 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022037 [exp] 326 / 5e-111 AT4G02800 276 / 1e-91 unknown protein Lus10000658 [exp] 326 / 1e-110 AT4G02800 266 / 1e-87 unknown protein Lus10014668 [exp] 308 / 2e-103 AT4G02800 262 / 1e-85 unknown protein Lus10042577 [exp] 132 / 6e-37 AT4G02800 109 / 1e-28 unknown protein Lus10035609 [exp] 101 / 5e-24 AT1G30050 187 / 5e-56 unknown protein Lus10019115 [exp] 100 / 4e-23 AT2G30530 267 / 5e-86 unknown protein Lus10034444 [exp] 100 / 4e-23 AT2G30530 268 / 3e-86 unknown protein Lus10031947 [exp] 97 / 1e-22 AT5G01970 263 / 1e-85 unknown protein Lus10035153 [exp] 97 / 7e-22 AT5G01970 264 / 8e-85 unknown protein Lus10003240 [exp] 92 / 3e-20 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G209400.1 pacid=42802592 polypeptide=Potri.005G209400.1.p locus=Potri.005G209400 ID=Potri.005G209400.1.v4.1 annot-version=v4.1 ATGGCTGCTTCAGTGGGTTCCCCATCACCAGCTGCCAGCCTCAACAAGGAGTCCACAAGCTTGATAGTTTCTTCTCCTCTGTTTTGTCCGGCATCAGATA AGCGTTTTTGGAGCTCTCTCCGTGGCCGGATCGACACCCTTCTTGAGAATCGGCACCGTAGTGTCTCGATCGGTCAAGATCAGCTCAATCTTGATCCTTC TTTAGGCACCAATGTGAGAGTAGGTGAATCGGATCGAGCAAAGAGAATGAAGGAGGATTCCTTACTTCTGTTAAGAGGGTTTGACTCCATTGCTCAAAAT CTTTCTCAGCTCTCTAGTAATCTGGACAACGCTCTTCAGGGAGCTAGATATCTAGCTGAACCACCCACATTGAGAGAAATATTCCACAGTAGACTCGAGA ACTCTGAGTTCAGGCAAGAAGATGTAGAAAAGGAAAAAATTGAAGAAGGGAAAAAGACAAGATTGAAGAGGAAGTTTGATCCAGATGATAGATCAGAAGA ACAAGGAAATGATTTTCACAAGGAGAATGAACAATGTCTCGAAGATAAAAAGCTGAAGAAAGCCAAAAATCTGGCAGTTTCCATGGCAACAAAAGCAGCA GCGCTTGCAAGGGAACTCAAGTCTATGAAATCTGATTTCTGTTTTATGCAAGAGCGATGCGCTCTGCTTGAGGAGGAAAACAGGAGGATTCGAGATGGAT TCTGCGAGGGGACTAGACCAGAAGAAGATGACCTGATGAGGCTTCAGATGGAAGCACTGCTTGCAGAAAAATCCAGGTTAGGTAATGAAAATGCTAATCT TAAGCGGGAAAACCAATGCCTTCACCAGCTTGTAGAGTACCACCAAATCACTACACAAGATCTCTCTGCATCTTATGAGCAAGTTATCCGTGGAACATGC TTGGACTTTTCTTCTCCAACATCCTCTATGATGGAAGCGGCAGACAATGAAGATGACAGTGAAGTTGCAAAAACAACTCCGAATATTTTTGGATTCGCCA CTTCTCTTGATGAATCCTGTCACGAAGAAGCACGGATGAGCAAGTAA
AA sequence Show only first row Show all	>Potri.005G209400.1 pacid=42802592 polypeptide=Potri.005G209400.1.p locus=Potri.005G209400 ID=Potri.005G209400.1.v4.1 annot-version=v4.1 MAASVGSPSPAASLNKESTSLIVSSPLFCPASDKRFWSSLRGRIDTLLENRHRSVSIGQDQLNLDPSLGTNVRVGESDRAKRMKEDSLLLLRGFDSIAQN LSQLSSNLDNALQGARYLAEPPTLREIFHSRLENSEFRQEDVEKEKIEEGKKTRLKRKFDPDDRSEEQGNDFHKENEQCLEDKKLKKAKNLAVSMATKAA ALARELKSMKSDFCFMQERCALLEEENRRIRDGFCEGTRPEEDDLMRLQMEALLAEKSRLGNENANLKRENQCLHQLVEYHQITTQDLSASYEQVIRGTC LDFSSPTSSMMEAADNEDDSEVAKTTPNIFGFATSLDESCHEEARMSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02800			unknown protein		Potri.005G209400 [exp]	0	1
AT2G16270			unknown protein		Potri.001G289100 [exp]	1.73	0.9774
AT5G16250			unknown protein		Potri.008G078000 [exp]	3.00	0.9769
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.011G163500 [exp]	3.00	0.9710
AT4G01730			DHHC-type zinc finger family p...		Potri.014G112000 [exp]	3.46	0.9743
AT3G42725			Putative membrane lipoprotein ...		Potri.018G065700 [exp]	4.47	0.9705
AT4G02800			unknown protein		Potri.002G053100 [exp]	4.69	0.9769
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.002G224600 [exp]	5.83	0.9666
AT1G04030			unknown protein		Potri.002G258501 [exp]	6.32	0.9717
AT1G23790			Plant protein of unknown funct...		Potri.010G038600 [exp]	8.06	0.9686
AT5G15510			TPX2 (targeting protein for Xk...		Potri.004G118700 [exp]	8.36	0.9743

Compare expression of checked genes

Potri.005G209400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.