Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63140 597 / 0 CSP41A chloroplast stem-loop binding protein of 41 kDa (.1) AT1G09340 199 / 7e-60 CSP41B, CRB, HIP1.3 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053000 [exp] 691 / 0 AT3G63140 594 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.013G006100 [exp] 202 / 4e-61 AT1G09340 647 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Potri.005G010266 [exp] 198 / 1e-59 AT1G09340 652 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014669 [exp] 613 / 0 AT3G63140 592 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10006931 [exp] 602 / 0 AT3G63140 582 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10031435 [exp] 202 / 6e-61 AT1G09340 644 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10001525 [exp] 199 / 9e-60 AT1G09340 638 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.005G209500.3 pacid=42805015 polypeptide=Potri.005G209500.3.p locus=Potri.005G209500 ID=Potri.005G209500.3.v4.1 annot-version=v4.1 ATGGCTACTCTTGCTCCTTCATCCTCCTCTCCCATATTCTCTGGTCCATCTTCAAAGCTTTCTCAACCTTCCCTCTCATCCTCATCACGCCTTTCTCTTT CTTCTTTCTCGCAGCTGTCTCCTCTCTCTTCTTCTCTTTCCATATCTCCTTCCTTTTCTGCTTACCCCACATGTTCAAGACGCCTCTTTGCCTCTTCTTT CCCTGTCAAGGCTAGTGCTGCTGAGAAAAAGAAGATCCTTATAGTTAATACGAACAGTGGTGGTCATGCAGTTATTGGGTTCTATTTTGCAAAAGAACTT CTGGGTTCTGGCCATGAAGTAAGTATCTTGACTGTTGGTGAGGAGAGTTCAGACAAAATGAAGAAGCCTCCATTCAGTAGATTCTCAGAAATTGTGGGTG CTGGAGGGAAGACGGTATGGGGGAACCCAGCAGAGGTAGGGAAGGCTGTGGAAGGAGCAACATTTGATGTGGTGCTGGATAACAATGGAAAGGACCTGGA TACTGTAAGGCCTGTAGTAGACTGGGCCAAGAGTGCTGGTGTGAAGCAGTTCCTGTTCATCAGCAGTGCTGGAATCTACAAACCAACCGATGAGCCTCCT CATGTTGAAGGGGATGTTGTTAAAGCTGATGCTGGTCATGTTGGGGTGGAAAAATACATAGCAGAGATTTTCAGTAGTTGGGCTATATTCCGTCCACAAT ACATGATTGGATCTGGCAACAATAAAGATTGTGAGGAGTGGTTTTTTGATCGAATTGTCCGAAAAAGGCCAGTGCCAATCCCTGGTTCTGGGATGCAACT GACTAACATCGCCCATGTTAGGGACTTATCCTCTATGCTTACTCTAGCTGTGGAGAACCCAGAAGCTGCATCCGGCAACATATTCAACTGTGTAAGCGAC CGTGCTGTGACCCTGGATGGAATGGCCAAACTCTGTGCACAAGCTGCAGGTCTACCAGTAGAAATCATGCATTATGATCCAAAAGCTGTTGGAATTGATG CGAAGAAAGCTTTTCCTTTCCGAAATATGCACTTTTATGCAGAACCACGAGCTGCCAAGGACATCTTGGGATGGCAGGGCACCACAAACCTTCCTGAAGA CTTGAAGGAGCGATTTGATGAGTATGTAAAGATTGGCCGAGACAAGAAGCCAATGCAATTCGAGATTGACGATAAAATACTCGAGTCGCTGAAAGTTCCA GTTGCTGCGTGA
AA sequence Show only first row Show all	>Potri.005G209500.3 pacid=42805015 polypeptide=Potri.005G209500.3.p locus=Potri.005G209500 ID=Potri.005G209500.3.v4.1 annot-version=v4.1 MATLAPSSSSPIFSGPSSKLSQPSLSSSSRLSLSSFSQLSPLSSSLSISPSFSAYPTCSRRLFASSFPVKASAAEKKKILIVNTNSGGHAVIGFYFAKEL LGSGHEVSILTVGEESSDKMKKPPFSRFSEIVGAGGKTVWGNPAEVGKAVEGATFDVVLDNNGKDLDTVRPVVDWAKSAGVKQFLFISSAGIYKPTDEPP HVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVENPEAASGNIFNCVSD RAVTLDGMAKLCAQAAGLPVEIMHYDPKAVGIDAKKAFPFRNMHFYAEPRAAKDILGWQGTTNLPEDLKERFDEYVKIGRDKKPMQFEIDDKILESLKVP VAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	0	1
AT4G10300			RmlC-like cupins superfamily p...		Potri.013G089600 [exp]	1.73	0.9892
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	2.00	0.9887
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	2.44	0.9871	Pt-HHOA.1
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Potri.002G083500 [exp]	3.46	0.9851	NPQ4.1
AT3G19810			Protein of unknown function (D...		Potri.010G170100 [exp]	4.89	0.9750
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	5.47	0.9830
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.002G062100 [exp]	6.48	0.9818
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.005G097000 [exp]	7.14	0.9767
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Potri.019G042600 [exp]	8.00	0.9810
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.006G265400 [exp]	8.94	0.9761

Compare expression of checked genes

Potri.005G209500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.