Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RANGAP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63130 667 / 0 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 596 / 0 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G06000 165 / 7e-48 RNI-like superfamily protein (.1) AT1G10510 113 / 3e-26 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT1G47200 52 / 1e-07 WPP2 WPP domain protein 2 (.1) AT5G43070 46 / 1e-05 WPP1 WPP domain protein 1 (.1) AT2G20210 44 / 0.0002 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052900 [exp] 896 / 0 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 686 / 0 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.008G193700 [exp] 106 / 4e-24 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.014G021900 [exp] 52 / 2e-07 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.002G122000 [exp] 49 / 1e-06 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014670 [exp] 763 / 0 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10006930 [exp] 751 / 0 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10034066 [exp] 627 / 0 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10010523 [exp] 624 / 0 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10030658 [exp] 113 / 4e-26 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030829 [exp] 110 / 3e-25 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10042643 [exp] 57 / 3e-09 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1) Lus10009747 [exp] 51 / 2e-07 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1) Lus10010235 [exp] 51 / 3e-07 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10016591 [exp] 45 / 0.0001 AT5G55540 1027 / 0.0 LOPPED 1, tornado 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13943 [poplar] [flax] WPP WPP domain
Representative CDS sequence Show only first row Show all	>Potri.005G209600.1 pacid=42802700 polypeptide=Potri.005G209600.1.p locus=Potri.005G209600 ID=Potri.005G209600.1.v4.1 annot-version=v4.1 ATGGATTCTGTGACACAAACTTTCCAACATCGCATGTCTGTCAAATTGTGGCCTCCTAGTCAGAGTACCAGGCTAATGCTTGTAGAGCGGATGAGCAAGA ACTTCATTACTCCATCCTTTATCTCCAGAAAGTATGGGTTATTGAACAAAGAGGAGGCTGAGGAGGGTGCCAAGAAAATCGAAGAGATGGCTTTTGCAGC TGCGAACCAGCACCATGAGAAAGAGCCGGATGGTGATGGAAGTTCTGCAGTGCAGATCTATGCTAAAGAATCTAGTAGGCTTATGTTGGAGGTTCTTAAA AGGGGGCCCAAAACACAGGAGGATGAAGAGGTGAAGACAGTTGATGAAGCTTCTGCTGCTGTTGCGAATCTGTTTGATATATCTGGTGGCCGGCGGGAAT TTATTAGTGGGGAGGAGGCTGAGGAACTCTTAAAACCCCTCAAGGTGCCAGGAAACTTGTATACTAGGATATGTTTCAGTAATAGAAGCTTTGGCTTGGA TGCAGCCCATGTCGCAGAATCCATCTTGTTGTCCATAAAGGGTCAATTGACAGAAGTGGACCTGTCAGACTGTGTTGCTGGAAGACCTGAATCAGAAGCT CTTGAAGTCATGGGTATATTTTCTTCAGCCCTAGAAGGTTGTAAATTGAGGTATCTGAACCTTTCAAATAATGCATTAGGCGAAAAGGGTGTCAGGGCCT TTGGGATGCTTCTCAAAACCCAGAATATTTTGGAGGAGCTTTATTTAATAAATGATGGTATTTCAGAAGAAGCTGCACGTGCAGTTTGTGAGCTAATTCC TTCAACTGAGAAGCTTAAGGTCCTTCATTTTCACAATAATATGACTGGAGATGAAGGTGCAGCTGCTATTGCTGAGATGCTGAAACAATCCAATTTGTTA GAGGATTTTCGATGTTCTTCAACAAGGGTGGGCTTGGAAGGGGGTGTTGCCTTAGCAGAAGCTCTTGGATCATGTAGCCATTTGAGGAAGCTTGATCTGC GTGATAACATGTTTGGTGTTGAAGCTGGTATAGCTCTGAGCAAGTCTTTATTTGCATTTGCAGATCTTACTGAAGTTTACCTCAGTTATCTGAATTTGGA GGATGAGGGGGCAGAAGCACTTGCTAATGCGTTAAAAGAATCTGCACCTTCACTGGAAGTTCTGGATATGGCTGGGAATGACATTACAGCCAAGGGTGCT TCTTCTTTGGTTGCCTGTATTGTGGCAAAACAATTTCTCACCAAATTAAATCTTGCTGAAAATGAACTGAAGGATGAAGGTGCTATTTTGATTGCCAAGG CAATTGAAGCCGGTCATGACCAGCTAAATGAAGTTGATTTGAGCACTAATGCAATTAGACGTGCTGGGGCAAGGCTCTTGGCACAGGCTGTTGTGCATAA GCCTGGATTTAAATCGTTAAATATCAATGGTAATTACATTTCTGATGAAGGGATTGATGAGGTGAAGGATATATTTAAGAGTTTGCCTGATGTGCTTGGA AAATTGGACGAGAATGATCCAGAAGGAGAAGATCTTGATGAGGATGCAAGAGACGAGGATGAGGATGCAATAGAGGAGGATGAATTGGAATCAAAACTCA AGGGGCTAGAAATCAAGCATGAAGAGTAG
AA sequence Show only first row Show all	>Potri.005G209600.1 pacid=42802700 polypeptide=Potri.005G209600.1.p locus=Potri.005G209600 ID=Potri.005G209600.1.v4.1 annot-version=v4.1 MDSVTQTFQHRMSVKLWPPSQSTRLMLVERMSKNFITPSFISRKYGLLNKEEAEEGAKKIEEMAFAAANQHHEKEPDGDGSSAVQIYAKESSRLMLEVLK RGPKTQEDEEVKTVDEASAAVANLFDISGGRREFISGEEAEELLKPLKVPGNLYTRICFSNRSFGLDAAHVAESILLSIKGQLTEVDLSDCVAGRPESEA LEVMGIFSSALEGCKLRYLNLSNNALGEKGVRAFGMLLKTQNILEELYLINDGISEEAARAVCELIPSTEKLKVLHFHNNMTGDEGAAAIAEMLKQSNLL EDFRCSSTRVGLEGGVALAEALGSCSHLRKLDLRDNMFGVEAGIALSKSLFAFADLTEVYLSYLNLEDEGAEALANALKESAPSLEVLDMAGNDITAKGA SSLVACIVAKQFLTKLNLAENELKDEGAILIAKAIEAGHDQLNEVDLSTNAIRRAGARLLAQAVVHKPGFKSLNINGNYISDEGIDEVKDIFKSLPDVLG KLDENDPEGEDLDEDARDEDEDAIEEDELESKLKGLEIKHEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	0	1	Pt-RANGAP1.1
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	2.64	0.9495
AT5G05240			Uncharacterised conserved prot...		Potri.019G058200 [exp]	6.00	0.9411
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	6.16	0.9465	ATK1.2
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	6.48	0.9446
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	7.07	0.9257
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	7.34	0.9368
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	8.36	0.9273
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	9.00	0.9257	Pt-SOM1.1,CHR905
AT3G53320			unknown protein		Potri.006G131650 [exp]	10.90	0.9184
AT5G02370			ATP binding microtubule motor ...		Potri.006G085300 [exp]	12.48	0.9213

Compare expression of checked genes

Potri.005G209600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.