Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02790 476 / 6e-169 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT2G41670 96 / 1e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G07050 88 / 8e-19 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT2G27200 70 / 8e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G52980 69 / 1e-12 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT4G10650 68 / 2e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 61 / 4e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G39960 46 / 4e-05 GTP binding;GTP binding (.1) AT3G12080 43 / 0.0002 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048900 [exp] 91 / 3e-20 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G083100 [exp] 89 / 1e-19 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G241100 [exp] 78 / 2e-15 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 72 / 1e-13 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G017000 [exp] 59 / 2e-09 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G054200 [exp] 45 / 6e-05 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.004G230600 [exp] 43 / 0.0003 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006927 [exp] 469 / 7e-167 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 418 / 2e-143 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10031060 [exp] 96 / 7e-22 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006578 [exp] 84 / 9e-18 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014654 [exp] 83 / 2e-17 AT4G10650 383 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028574 [exp] 79 / 9e-16 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 78 / 2e-15 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 66 / 3e-11 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10018858 [exp] 62 / 4e-10 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10004103 [exp] 60 / 1e-09 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.005G209900.1 pacid=42803518 polypeptide=Potri.005G209900.1.p locus=Potri.005G209900 ID=Potri.005G209900.1.v4.1 annot-version=v4.1 ATGGGTGTAGAGGTCCTGGGACTATGGTTACCTAATCCAGCAATCCGGTTCAACAGGCCACCATTTCTTCACCTATCACCTCCAACTAGAGCATCACTTG TTACACCAGCTTCTCTCTCTTCTCCACCCCCCACCATCCAGATTGTTGGTGGAAAAAGTACTCCAAGTTGGCAAGGAAGTGGAAATGATGTTTGTGGAGG AGGAGGAGAAGAGACCGACTGGTACGATTTTGAAACTGATCTTTATCATTGGACCAAACCACTGCGTCCTGTTCAGTGGTATCCAGGTCATATTGCGAAA ACGGAAAAAGAACTTAAAGAGCAACTCAAGTTGATGGATGTTGTCATTGAAGTTCGAGATGCCAGAATTCCCTTGTCTACTACCCATCCACAGATGGACG CGTGGCTTGGAAATAGGAAAAGGATTTTGGTCTTGAATAGAGAAGATATGATATCTAAGGCAGACCGGAATGCCTGGGCTACTTATTTTGCAAGACAGGG AATAAAAGTAGTCCTTTCCAATGGCCAACTTGGAATGGGTACTATGAAGCTGAGCAGGTTTGCAAAGTCATTAGCAGCAAGTGTAAATGTCAAACGCAGA GAAAAAGGACTCCTTCCTCGTCCCGTTCGAGCTGGAATAGTCGGGTACCCAAATGTTGGGAAGTCATCCTTGATCAACCGTTTACTGAAGCGTCGAATGT GTCCAGCAGCTCCCAGACCTGGAGTTACAAGAGAGTTAAGATGGGTTCGATTCGGGAATGACCTTGAGCTGCTAGACTCTCCTGGAATAATCCCAATGCG GATCAGTGATCAATCAGCTGCTATAAAGCTTGCTATTTGTGATGATATTGGAGAGAGATCCTATGATGTCACTGATGTTGCTGCAATTCTTGTCCAAATT CTGACAAAGCTCCCAACAGTGGGTGCAAAAGCTCTTAATAACCGCTACAAGATGGATGCTGATGACTTCTGTGGTAAAATATTTGTCCAGAAGCTTTCAG TTCACTTGTTCAATGGGGACACCCATCAAGCAGCTTTTCGCATCCTGTCTGATTTTCGAAAAGGGAAGTTTGGTTGGGCGGCTCTGGAGAGGCCTCCCAG GTGA
AA sequence Show only first row Show all	>Potri.005G209900.1 pacid=42803518 polypeptide=Potri.005G209900.1.p locus=Potri.005G209900 ID=Potri.005G209900.1.v4.1 annot-version=v4.1 MGVEVLGLWLPNPAIRFNRPPFLHLSPPTRASLVTPASLSSPPPTIQIVGGKSTPSWQGSGNDVCGGGGEETDWYDFETDLYHWTKPLRPVQWYPGHIAK TEKELKEQLKLMDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVVLSNGQLGMGTMKLSRFAKSLAASVNVKRR EKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVTDVAAILVQI LTKLPTVGAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSDFRKGKFGWAALERPPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Potri.005G209900 [exp]	0	1
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	1.00	0.9757
AT2G02740		WHY3, ATWHY3, P...	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.008G149100 [exp]	1.41	0.9718
AT3G04310			unknown protein		Potri.010G063300 [exp]	2.44	0.9635
AT5G61490			Uncharacterised conserved prot...		Potri.014G057200 [exp]	3.16	0.9550
AT5G22210			unknown protein		Potri.009G162200 [exp]	3.46	0.9532
AT3G26770			NAD(P)-binding Rossmann-fold s...		Potri.004G200100 [exp]	3.87	0.9523	Pt-CTS2.8
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	8.71	0.9611
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G028500 [exp]	9.00	0.9552
AT2G22360			DNAJ heat shock family protein...		Potri.007G094900 [exp]	9.16	0.9529
AT4G19390			Uncharacterised protein family...		Potri.004G234600 [exp]	9.32	0.9448

Compare expression of checked genes

Potri.005G209900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.