Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19330 978 / 0 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 809 / 0 ABAP1 ARMADILLO BTB protein 1 (.1) AT3G06190 86 / 1e-17 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 81 / 5e-16 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G43700 77 / 1e-14 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT1G71020 76 / 4e-14 ARM repeat superfamily protein (.1.2) AT1G23030 76 / 6e-14 PUB11 ARM repeat superfamily protein (.1) AT3G03740 74 / 9e-14 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT2G39760 72 / 4e-13 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT5G67340 71 / 1e-12 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052700 [exp] 1239 / 0 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G150100 [exp] 1006 / 0 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G090900 [exp] 876 / 0 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G184200 [exp] 81 / 7e-17 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 81 / 6e-16 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.004G194200 [exp] 79 / 2e-15 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 79 / 2e-15 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.010G113900 [exp] 77 / 1e-14 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.010G001400 [exp] 77 / 2e-14 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034070 [exp] 946 / 0 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 941 / 0 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 868 / 0 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 857 / 0 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10041235 [exp] 90 / 7e-20 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 88 / 2e-18 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10043471 [exp] 78 / 1e-14 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10027086 [exp] 77 / 2e-14 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034113 [exp] 77 / 4e-14 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10039047 [exp] 73 / 3e-13 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.005G210000.1 pacid=42803119 polypeptide=Potri.005G210000.1.p locus=Potri.005G210000 ID=Potri.005G210000.1.v4.1 annot-version=v4.1 ATGGATCGCCCGACAAGGAAAAGCTTGAAGCGAAAATTAGAGCAGGATTTCGAACACGAAAATCAAAGCCGCCACAAGATTCCCGCCACCGACGGCTTTG AGACTCACCAAAAACTTACGTCCAGTATTCAATCGCTAGTTGATATCCTCAATTCCACCTTCTCTACTCTTGAAGCCGATCGCGCTGCCGCCAAGCGCGC CACTAGCGCCCTCTCTCAAATTGCCAAGAACGAGGAAGTAGTGGATACGATAGTGGATTGTGGTGCGGTACCTGCGTTGGTGGTGCACCTTCAAACACCA CCGCCTTTGAGAGGAGAAAATGGCCCAAAACTGTATGAACATGAAGTGGAGAAAGGAAGTGCTTACGCTCTTGGACTTCTTGCAGTAAAACCGGAGCATC AACAACTAATAGTAGATGCTGGAGCTCTGACCCACCTCGTGGAATTGTTGAAGAGACATAAGAGTGCTGATAACTCTCGAGCAGTCAATGGTGTTGTTAA GAGAGCAGCTGATGCAATCACTAACCTTGCCCATGAGAATAGTGGCATTAAAACACGTGTCAGGATTGAAGGTGCCATTCCCTTTCTTGTTGAATTGCTT GAGCATGCTGATAATAAGGTACAGAGAGCAGCTGCAGGTGCCTTGCGGACCCTTGCGTTTAAAAATGACGAGAACAAAAATCTGATTGTAGAATGTAATG CCTTACCCACTCTTGTAATAATGCTTCGATCAGAGGATACTGCTATACATTATGAAGCGGTTGGTGTGATCGGAAACCTAGTTCACTCTTCCCCACACAT AAAGAAAGCAGTTCTTCTTGCTGGTGCTTTACAACCTGTAATTGGATTGCTAAGTTCTTCCTGTTCAGAAAGCCAAAGAGAAGCAGCTTTGTTATTGGGT CAATTTGCAGCTGCTGATTCAGATTGCAAGGTGCACATTGTTCAGAGAGGAGCTGTGAAGCCATTGATTGATATGCTTGAGTCCTCAGATGTGCAGCTCA AAGAAATGTCAGCCTTTGCACTTGGGAGGTTGGCACAGGAAACGCACAACCAAGCAGGCATTGCCCATAATGGTGGTATCGTCCCATTACTTAGGCTCCT TGATTCGAAAAGTGGACCACTCCAACATAATGCTGCATTTACCCTATATGGTCTTGTTGATAATGAGGATAACGTTGCAGATCTTATCAAGGTCGGGGGT TTCCAGAAACTCCAAGATGGAGAATTCATTGTACAACAAACAAAGGACTGTGTTGCGAAAACAATGAAAAGGCTAGAGGAGAAGATTCATGGACGAGTAT TGAACCATCTCTTATATTTGATGCGGGTTTCAGAAAGGAATATTCAGAGACGAATTGCTTTGGCTCTTGCTCATCTTTGTACTCCTAATGACCGAAAAGT AATTTTTCTTCATAAAAATGGGTTAGATTTGCTGTTGGGGCTTCTCGAGTCTGGAAGCTTGAAGCAGCAACGTGAGGGCTCAGTGGCCTTGTACAAGCTG GCTACCAAAGCCACATCAGTCTCTCCTGTGGATTCAGCTCCTCTATCTCCTACCCCACTGGTGTATTTGGGTGAGCAATACGTTAACAATCCTACATTGT CTGATGTTACCTTCTTAGTTGAAGGCAAACGGTTCTATGCTCACCGAATTTGTCTGCTAGCTTCTTCGGATGCTTTCCGTGCGATGTTTGACGGGGGTTA TAGAGAAAGGAATGCTAAAGACGTGGAGATCCCAAATATTAGATGGGATGTTTTTGAATTGATGATGAGGTTCATATATACAGGATCAGTGGAAGTCAAT GTAAATATTGCTCAGGATCTGCTTAGAGCTGCTGACCAATATCTTTTGGATGGCCTCAAGCGTCTCTGTGAATGTACCATTGCACAGGATATTTCTGTGG AAAACGTTTCTCTCATGTACGAGTTGTCCGAGGGCTTCAATGCTATGTCATTAAGGGAAGCATGCATTCTGTTCATACTGGAACAATTCGACAAGTTATG TACCAAGCGATGGTCATCTAGTTTGATCCAACGCATTATGCCTGAGATACGCAATTACTTTGAGAAAGCACTAAGCAAGCCTACCAATCTATCTTGA
AA sequence Show only first row Show all	>Potri.005G210000.1 pacid=42803119 polypeptide=Potri.005G210000.1.p locus=Potri.005G210000 ID=Potri.005G210000.1.v4.1 annot-version=v4.1 MDRPTRKSLKRKLEQDFEHENQSRHKIPATDGFETHQKLTSSIQSLVDILNSTFSTLEADRAAAKRATSALSQIAKNEEVVDTIVDCGAVPALVVHLQTP PPLRGENGPKLYEHEVEKGSAYALGLLAVKPEHQQLIVDAGALTHLVELLKRHKSADNSRAVNGVVKRAADAITNLAHENSGIKTRVRIEGAIPFLVELL EHADNKVQRAAAGALRTLAFKNDENKNLIVECNALPTLVIMLRSEDTAIHYEAVGVIGNLVHSSPHIKKAVLLAGALQPVIGLLSSSCSESQREAALLLG QFAAADSDCKVHIVQRGAVKPLIDMLESSDVQLKEMSAFALGRLAQETHNQAGIAHNGGIVPLLRLLDSKSGPLQHNAAFTLYGLVDNEDNVADLIKVGG FQKLQDGEFIVQQTKDCVAKTMKRLEEKIHGRVLNHLLYLMRVSERNIQRRIALALAHLCTPNDRKVIFLHKNGLDLLLGLLESGSLKQQREGSVALYKL ATKATSVSPVDSAPLSPTPLVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYRERNAKDVEIPNIRWDVFELMMRFIYTGSVEVN VNIAQDLLRAADQYLLDGLKRLCECTIAQDISVENVSLMYELSEGFNAMSLREACILFILEQFDKLCTKRWSSSLIQRIMPEIRNYFEKALSKPTNLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.005G210000 [exp]	0	1
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	2.82	0.9175
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	4.12	0.9322
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	5.19	0.9245
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	5.29	0.9314
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G087300 [exp]	5.91	0.8911
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	8.48	0.9212
AT2G37960			unknown protein		Potri.006G094600 [exp]	10.24	0.9179
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Potri.003G104700 [exp]	10.81	0.9127
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	12.00	0.9184
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	12.72	0.9148

Compare expression of checked genes

Potri.005G210000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.