Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63200 560 / 0 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT2G39220 251 / 5e-79 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 246 / 4e-77 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 228 / 8e-70 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT4G37060 112 / 2e-27 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT5G43590 108 / 5e-26 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37070 103 / 2e-24 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37050 98 / 2e-22 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT2G26560 86 / 3e-18 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052600 [exp] 618 / 0 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.010G221700 [exp] 254 / 2e-80 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.008G040500 [exp] 253 / 3e-80 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.015G122700 [exp] 228 / 7e-71 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.012G123900 [exp] 227 / 3e-70 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.007G042200 [exp] 109 / 1e-26 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.007G040400 [exp] 102 / 4e-24 AT2G26560 402 / 8e-139 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.007G040300 [exp] 102 / 7e-24 AT2G26560 390 / 6e-134 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.004G084233 [exp] 98 / 3e-23 AT2G26560 369 / 1e-127 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022040 [exp] 400 / 4e-140 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10041402 [exp] 248 / 2e-78 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10040394 [exp] 246 / 3e-77 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10036526 [exp] 238 / 2e-74 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10042584 [exp] 222 / 5e-72 AT3G63200 239 / 3e-79 PATATIN-like protein 9 (.1) Lus10023512 [exp] 217 / 1e-65 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 193 / 2e-57 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 130 / 2e-35 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10042585 [exp] 122 / 2e-33 AT3G63200 110 / 9e-06 PATATIN-like protein 9 (.1) Lus10000279 [exp] 105 / 6e-25 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.005G210100.1 pacid=42804018 polypeptide=Potri.005G210100.1.p locus=Potri.005G210100 ID=Potri.005G210100.1.v4.1 annot-version=v4.1 ATGGACCTTAGTAAGGCAACGCTAGAGATCTTCTCCAAACTGGAGCAGAAATGGCTCTCGCACTGTGAAACCACCAAGAAAACGCGAGTGCTAAGCATTG ATGGTGGAGGCACAACTGGCATTGTGGCCGCTGCTGCTCTCATCCACCTTGAGGACCAGATCCGCTTCAAAACTGGCGATCCTCAAGCTCGGATCGCCGA TTTCTTTGATATCATTGCTGGCACTGGAATCGGAGCTCTCCTCGCCACCATGCTCGCCGCCGACGATGGTTCTGGCCGTCCGCTCTTCACTGCCAGAGAC GCCGTTGCATTTGTTGCCGACAAAAACTCCGACCTCTTCAAAGCGAAGCACGGTGGCTTCCTCCTCCGCCGCAGGAGGTTCTCTGGTAAGAGCATGGACA GAGTATTGAAAGAAGCGTTGAAGAGGGATGATGGAGCTAGTTTGACCTTGAAGGACACGTGTAAGCCTCTCCTTGTTCCTTGCTTTGACCTAAAGAGCTC TGCTCCTTTTGTTTTCTCCCGAGCAGACGCGACCGAATCACCAAGTTTTAACTTCGAGCTCTGGAAAGTCTGCCGTGCCACGTCAGCGACTCCAAGCCTC TTCAAGCCGTTTAACTTAACGTCAGTTGATGGCAAAACCTCGTGCTCCGCAATTGACGGAGGTCTCGTGATGAACAATCCAACAGCAGCGGCAGTTACAC ACGTGCTCCACAACAAGCGTGATTTCCCCACCGTTAATGGCGTAGAGGATCTGTTGGTTCTGTCATTAGGAAACGGAAGTGGATCGCTGACTGGAAGGAA GCTCCGTCATAACGGCGAGTGCTCGACGTCGTCTATTGTTGACATTGTGCTCGACGGAGTCTCAGAGACTGTTGACCAAATGCTGGGTAACGCATTCTGT TGGAACCGTAATGATTACGTCAGAATTCAGGCAAACGGATTAGCGAGCGTGGAGGAGGAGGTGCTAAAGGAGAGAGGAGTGGAAACGTTACCGTTTGGCG GGAAGCGGTTATTGACGGAGACCAACGCCGGAAGAATAGAGAGCTTTGTGCAACGACTTGTTGCTTCAGGGAAGAGTAGTTTGCCTCCTAGTCCTTGCAA GAACTCCGCCGTTAGTCCTCTTGCCAACAGTCGCTAA
AA sequence Show only first row Show all	>Potri.005G210100.1 pacid=42804018 polypeptide=Potri.005G210100.1.p locus=Potri.005G210100 ID=Potri.005G210100.1.v4.1 annot-version=v4.1 MDLSKATLEIFSKLEQKWLSHCETTKKTRVLSIDGGGTTGIVAAAALIHLEDQIRFKTGDPQARIADFFDIIAGTGIGALLATMLAADDGSGRPLFTARD AVAFVADKNSDLFKAKHGGFLLRRRRFSGKSMDRVLKEALKRDDGASLTLKDTCKPLLVPCFDLKSSAPFVFSRADATESPSFNFELWKVCRATSATPSL FKPFNLTSVDGKTSCSAIDGGLVMNNPTAAAVTHVLHNKRDFPTVNGVEDLLVLSLGNGSGSLTGRKLRHNGECSTSSIVDIVLDGVSETVDQMLGNAFC WNRNDYVRIQANGLASVEEEVLKERGVETLPFGGKRLLTETNAGRIESFVQRLVASGKSSLPPSPCKNSAVSPLANSR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.005G210100 [exp]	0	1
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.003G116000 [exp]	3.00	0.7934	Pt-SMO1.1
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	5.47	0.8143
AT3G13510			Protein of Unknown Function (D...		Potri.001G233000 [exp]	8.83	0.7593
					Potri.011G077440 [exp]	9.89	0.7583
AT5G45780			Leucine-rich repeat protein ki...		Potri.004G059100 [exp]	10.67	0.7961
AT1G75060			unknown protein		Potri.002G133500 [exp]	14.24	0.7725
AT1G78172			unknown protein		Potri.002G096200 [exp]	15.00	0.7795
AT5G03050			unknown protein		Potri.014G110300 [exp]	18.16	0.7336
AT1G07790		HTB1	Histone superfamily protein (....		Potri.010G231300 [exp]	20.78	0.7920
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	25.69	0.7583

Compare expression of checked genes

Potri.005G210100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.