Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22380 289 / 1e-79 TIC time for coffee (.1.2) AT3G63180 167 / 1e-41 ATTKL TICKLE, TIC-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052300 [exp] 1557 / 0 AT3G22380 219 / 2e-57 time for coffee (.1.2) Potri.010G089700 [exp] 378 / 2e-109 AT3G22380 657 / 0.0 time for coffee (.1.2) Potri.008G151200 [exp] 364 / 1e-104 AT3G22380 639 / 0.0 time for coffee (.1.2) Potri.003G029500 [exp] 63 / 2e-10 AT3G22380 81 / 3e-17 time for coffee (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010535 [exp] 323 / 1e-90 AT3G22380 766 / 0.0 time for coffee (.1.2) Lus10002448 [exp] 221 / 2e-59 AT3G22380 520 / 9e-165 time for coffee (.1.2) Lus10002447 [exp] 57 / 6e-08 AT3G22380 110 / 9e-26 time for coffee (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G210200.2 pacid=42804706 polypeptide=Potri.005G210200.2.p locus=Potri.005G210200 ID=Potri.005G210200.2.v4.1 annot-version=v4.1 ATGGATAGAAATAGAGAAGGAAGGAGATCATCATCAAACATGGCAGCCTCTAACGGATTATCAAGACGGCGACAGCAGAGAACTACAAGAGATTCTACTG AGGATGGACAAATAATGGTACAAGAATCGGCGAGGCTGAGAGATAGAGGAGGGAGTAAGAGGGAAAGAGATCGAGAATTGTTGAGTAGGAATAAGCGTAG TAGAAGAAGAGGAGGAGGAGGAGGAGGAGGGGGGGGAGATAGGTCAGTACAAGGAAGTAATAAGGAAGAAGGAGAAGAGACTACAGAAGAAAGCATCGGT TATGAAGATGGTTATGAAATTGAAGATGGAGAGGTTTCTCGGTTGCGGCCGCCGCTGGGAGCTGTAAAACAAGTTCCCGGTTCTAGAGTCGCTGCTGACG AAATGATTGGTGTCTCTGTACCTAGAAAGGCCCGGTCAGCTTCTGTGAAGAGGTCACATGAGAGTTGGGTATCAGGAAATGGTGGATTTGGTTGTGAAGA CAGGCGAGCTTCGACTTCACCGGCGGCGAGCAGGAGCTTTGAGGCTGCATCGCCTTCTTCGTCGATTGTTTCGGTCATAAAAAAGACGAAATCAAGTGGA CCCAAGACTCGGCTTCCAAAAGTGTCGAAATCTTCTACAAGTTCAGTTCAGGAAGATTTTGAGATTGAGATCGCAGAAGTTTTGTATGGTTTAAAGAAGC AATCACACGGGCCTAAGAACGAGGAGAAGGCTGACAATGGTTTGCGGAAGATTGATTCAATGGATTCTAATGGAATCGTTCATGATTCTAAATCATCTCC GAATTCATACTTTTCTCGGACATCGATACTGAGTCAAAATAATACCTCTGCTTCGGATACTTTAATTGGTTTAGTTACAGGTGAAAGGGAGGATGCAAAA ATGGAATTTTCTGCAACGAAATCGGGGAAACCATCATTGTACTCAGAATCATGTGAGGTTTCACATGACATGGTTGCTTCTAAACTTGCGTCTGGGTTGG AGTCACAGGAGGAAGCAATGACACAACAGGATTCAAAACCGGCAATTGAAGAATCTGGGGTATCGACCAAGGAAAAATCTGTATTGCCAGAAGAGAAATC ACCTGTGAGCAAAAAATTGGATGTTGATATCCGTGATTCCGTTTTGAAAAAATCGACCTCAACCGTGTCAAAGGTAGACAGCCAGCGAGAGGAGAAGTTC GAGATCGATCTGATGGCTCCTCCTCCCATGGTGTCTTCTCCAGAATGGGATGGCTTTGTTGATTTGTCTTCGAATCCTAAGCCCGCAGCCCAAGATGTGG AAATGAAAATGGAAAATATGGTTAAGAATAAAGAATTGGTGGACAGTCCGGTGAAGAAGGAAGGGGTTCTTTTTGAAGATAAGGTGACGAAGACAGTTAG AGAAAAGCGTGGATTAAAACTAGATTTTGAGAAGCCGAATCGCAAAGTGCAGCAGAAACTGCAACCTAAAGCTACCGTTCCTAAAGTGGAGACAGCTGCT CAATCTGGTTCGTTGCCTTTGCCAATTGCCATACCTAGCTGGCAAAGTAGCAATCTTTTGCCTCTCGGATACACGACTTCCTTTCAGACAGTTGTGCCCA TGGATGGGACAACCAGATCATCCAAGGCATTACAGCCTCCACAGTTTATCCCTCAACCTCGGCCAAAGAGATGTGCAACCCATCATTATATTGCTTGCAA CATTCGCCTGCAACAGCAATTTACAAAGATGAACCATTTCTGGCCAGCGGCAGCTGGCTCTGCTACTCTATGTGGAGCCAAACCCAAGAACCTCAATGTA ATGCCTTCTGCGGAAAACATGATAATCAGACACCCATCGCAAGGTAGCTTTCCAGTTGTGAATCTAAATTCTGCCCAGGACAAAGTGCAGGCGGTGCCAA ACATTCCAGATTTTACTCGAAATGATAGAGGCTCTGAGAGTGCCACCTTGATAGATACAGCACAGAAGAAGCAGCTTGTGCTCCACCAGCCTCCACAGCC AGCCCCAGCTGGTAATTTAATGCATGGCCCTGCCTTCATCTTCTCCCTCAATCAGCATCAAGCGCCCACAGCAGCAATGACAAGTCAAACCGGGCCTTCT AAATCTGCTTCCCCAATCAACAATGAATCATTGTCTGGCAGTGCTGTAGCTGGAGTAACGACAAACTCTTCAGCATTGCCAGGGATGGCTGCAGCTGTGA GCTTTAGTTACCCAAATTTGGCAGCCAATGAAGCTCCGTACTTGACAATTCTACCAAACAATAGTTATCCATTCCCCATCTCCACTCCTGTTGGAAACCC AACATTCAGAGGTGGAACCCCTGCTCAAGCATTGTCTTTCTTTAATGGGTCTTTCTACTCATCTCAGATGTTACATCCATCCCAGCTTCAGCAGCAGCAA CCTCAACCTGTAGTCCAACCAGCACATCAGAATGCAAGTGCGTCAAGTGGCTCATCATCATCTCACAAGCAACCCCGAAGTCAGCAACGGGGGGCACATG TTAGCACCAATAACTTTTTGACCTCGACAATGATGCAGTCACAGCAGCTGCCAAAGACTCGTATACCTTCCCATCACACTCGGAAGCTTGACTCTGAGAT GAGTGGGGAGAGCACCCCAATAATTGCTGATACCCGAGCCTCTCACTCGAAAAGGAGTGTTAATGGCCCTAATTTCATGATTCCTCTTCAGCCAAACTTT GGTTTAATGGCTTCTACAAATGTTGGTGGCGGTGGAAATCATGGTGAAAAGCAGCAGCAGCAGCAATTGTCACAGGAAAAGAATTTAAAGGGTGGAGTAG AGCTTATCCCCTCTCAAGCATTTGCAATGTCATTCGCCTCTTTCAATGGAAGCAAGACAGCTTCGAACCTTAATTTCTCAGCTATGGCACAAAATCCTAC CATCTTACAAAGCTTCCCAGACATGACATGGCAGGGGTACCAGGTTGTATCAGCAGCTCAGGCCACACAAAAGAAGAACCACCAGCTGTCTGAAGGGAAG ACTGGAGGCAGTTCAACCAATCCTGACGATGGAAAAAAAGCTACAATGGGAAGGCCATCAACAAGTATTGGGCAGACACTTATTTTCGATAATTCAGCTA GAACTCTCGACTTTGTGCCATCTCCTTTCACTGGACACTGGCCTTCTCGCTCCATCACCGGACCTACAAGCATTCAAATGGCTGCTAACTCAAGCACAAC TTCTCAGCAACAACAGCTCGTTCAGCTTCAGAAGCAACATATTTTGCAGCAGCCTATTGGTGCAGCCGAAAGTAAAGCACCAACATCCAGCAGCCTGCCT TCGCCCTCCATTGATGCCAAGTTTTCAAATAATACTCCCATTTTTTCTCGAACTCAAGCTCAGGGAAGTACTCCACAAAATCCCCAGTGGAAGAACTCGT CCAGAACCCCTTCCACGCAATCCCCACTTGCATCTCTCTCAGCATCCAACACAGTTCATAAGAATGCTTCCCAGCAGCAAGGAAGAGCACCACAAGGCCG TAGCCAAATATCATTTGGGCAAAGTTCCAAGTCTGCTTTGCCACCACAAGGGCAACAAATATCCTCTAGTAACCATTCTCCATCTACTGGTGGCAACTCG ATAACAACTTCAAAGAATGCCAACGCTAATTCATCGGTTCCTGTTACACAGCCACAGCAGTGTGACAACTCCTCAAGTGGGAATGCCCAGAAGTCCTCCC CGGTTTGTGGTAGGAATGTGCCATCAATCTTAAGCACATGCCCCAGCCACCTTTCTGAGCTGGAGTACTAG
AA sequence Show only first row Show all	>Potri.005G210200.2 pacid=42804706 polypeptide=Potri.005G210200.2.p locus=Potri.005G210200 ID=Potri.005G210200.2.v4.1 annot-version=v4.1 MDRNREGRRSSSNMAASNGLSRRRQQRTTRDSTEDGQIMVQESARLRDRGGSKRERDRELLSRNKRSRRRGGGGGGGGGDRSVQGSNKEEGEETTEESIG YEDGYEIEDGEVSRLRPPLGAVKQVPGSRVAADEMIGVSVPRKARSASVKRSHESWVSGNGGFGCEDRRASTSPAASRSFEAASPSSSIVSVIKKTKSSG PKTRLPKVSKSSTSSVQEDFEIEIAEVLYGLKKQSHGPKNEEKADNGLRKIDSMDSNGIVHDSKSSPNSYFSRTSILSQNNTSASDTLIGLVTGEREDAK MEFSATKSGKPSLYSESCEVSHDMVASKLASGLESQEEAMTQQDSKPAIEESGVSTKEKSVLPEEKSPVSKKLDVDIRDSVLKKSTSTVSKVDSQREEKF EIDLMAPPPMVSSPEWDGFVDLSSNPKPAAQDVEMKMENMVKNKELVDSPVKKEGVLFEDKVTKTVREKRGLKLDFEKPNRKVQQKLQPKATVPKVETAA QSGSLPLPIAIPSWQSSNLLPLGYTTSFQTVVPMDGTTRSSKALQPPQFIPQPRPKRCATHHYIACNIRLQQQFTKMNHFWPAAAGSATLCGAKPKNLNV MPSAENMIIRHPSQGSFPVVNLNSAQDKVQAVPNIPDFTRNDRGSESATLIDTAQKKQLVLHQPPQPAPAGNLMHGPAFIFSLNQHQAPTAAMTSQTGPS KSASPINNESLSGSAVAGVTTNSSALPGMAAAVSFSYPNLAANEAPYLTILPNNSYPFPISTPVGNPTFRGGTPAQALSFFNGSFYSSQMLHPSQLQQQQ PQPVVQPAHQNASASSGSSSSHKQPRSQQRGAHVSTNNFLTSTMMQSQQLPKTRIPSHHTRKLDSEMSGESTPIIADTRASHSKRSVNGPNFMIPLQPNF GLMASTNVGGGGNHGEKQQQQQLSQEKNLKGGVELIPSQAFAMSFASFNGSKTASNLNFSAMAQNPTILQSFPDMTWQGYQVVSAAQATQKKNHQLSEGK TGGSSTNPDDGKKATMGRPSTSIGQTLIFDNSARTLDFVPSPFTGHWPSRSITGPTSIQMAANSSTTSQQQQLVQLQKQHILQQPIGAAESKAPTSSSLP SPSIDAKFSNNTPIFSRTQAQGSTPQNPQWKNSSRTPSTQSPLASLSASNTVHKNASQQQGRAPQGRSQISFGQSSKSALPPQGQQISSSNHSPSTGGNS ITTSKNANANSSVPVTQPQQCDNSSSGNAQKSSPVCGRNVPSILSTCPSHLSELEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	0	1
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.002G104800 [exp]	3.00	0.7992	UBP16.2
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G079400 [exp]	4.58	0.7866
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	5.74	0.8071
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	9.79	0.7841
AT5G22450			unknown protein		Potri.004G203500 [exp]	10.19	0.8008
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	11.31	0.7962
AT1G70950			TPX2 (targeting protein for Xk...		Potri.008G129300 [exp]	12.00	0.7141
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.002G045900 [exp]	12.24	0.7449	HAG906,HAT1.6
AT5G43310			COP1-interacting protein-relat...		Potri.010G070200 [exp]	14.17	0.7185
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	15.71	0.7698

Compare expression of checked genes

Potri.005G210200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.