Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 827 / 0 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G79460 287 / 6e-85 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 154 / 1e-38 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16740 91 / 3e-19 ATTPS03 terpene synthase 03 (.1.2) AT3G25820 84 / 9e-17 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT5G23960 84 / 1e-16 ATTPS21 terpene synthase 21 (.1.2) AT3G25830 84 / 1e-16 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25810 84 / 2e-16 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 83 / 3e-16 AtTPS10 terpene synthase 10 (.1) AT4G16730 77 / 2e-14 AtTPS02 terpene synthase 02 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052100 [exp] 1428 / 0 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 303 / 1e-90 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 300 / 2e-89 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 228 / 3e-63 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.007G074400 [exp] 112 / 2e-25 AT5G23960 441 / 6e-150 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 110 / 3e-25 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2) Potri.019G023014 [exp] 107 / 1e-24 AT4G16740 294 / 1e-96 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 108 / 2e-24 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 106 / 8e-24 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022047 [exp] 1040 / 0 AT4G02780 812 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042593 [exp] 1013 / 0 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006925 [exp] 961 / 0 AT4G02780 759 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004323 [exp] 882 / 0 AT4G02780 733 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006917 [exp] 270 / 6e-84 AT4G02780 210 / 3e-62 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 274 / 1e-79 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 231 / 5e-64 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 229 / 5e-64 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 222 / 1e-61 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 221 / 5e-61 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G210300.2 pacid=42803397 polypeptide=Potri.005G210300.2.p locus=Potri.005G210300 ID=Potri.005G210300.2.v4.1 annot-version=v4.1 ATGTCCTCTCATTACTCCTCCATCCATCTCTTGTCTACGGTACCAAGCACACCAAGATCTTCCTTTTCAACCTCTAATAATATCCATCCCCTTCCTTTCC CTGCAGGTGTTTGGTTGTATGGGGCTAAAGACAAAAAAGATAACATTCATACAAGGTGCAGTGCTATATCCAAGCCTCGCACTCAAGAATATGCAGATTT GTTTCAACAACAAAATGGTCTGCCATTGATAAACTGGCCTCACGATATTGTGGAGGATGACGCAGAAGAAGATGCTGCTAAGGTCTCTGTAGCAAAGGAA ATAAGCAAGCGCGTCAGAACTATTAAAGCAATGCTGGATATGATGGAGGATGGAGAGATAAGCATCTCAGCTTATGACACCGCATGGGTTGCTCTTGTGG AAGATATTAATGGGAGTGGCCTTCCCCAATTCCCATCTAGCCTTCAGTGGATTGCCAACAATCAGCTTCCAGATGGTTCGTGGGGTGACGCTGGAATATT TTTGGCGCATGATAGGTTGATTAATACGCTAGCTTGCGTGGTAGCATTGAAATCTTGGAACTTGCATCAAGATAAATGCGAAAAAGGGATGTTATTTTTT AGAGACAACTTATGCAAGCTTGAAGATGAAAATGCTGAGCACATGCCTATTGGATTTGAAGTTGCTTTCCCTTCACTTCTTGCGATAGCCAAAGAATTAG ACATCGAAGTTCCGGATGATTCTACTTTCCTTCAAGAGATTTATGCCAGGAGAAATTTAAAGCTGAAAAGGATTTCCAAGGACATAATGCACAATGTGCC CACGACCCTACTCCATAGCTTGGAAGGAATGCGAGGTCTGGACTGGAAACAGCTTATAAAATTGCAGTGCCTAGATGGGTCATTCTTATTCTCTCCATCC TCTACTGCCTTCGCACTCAGTCAAACTAAAGATAAAAACTGCTTGGAATATTTGAATAAGGCGGTCCAAAGATTCAAAGGGGGAGTTCCCAATGTCTACC CGGTTGACTTATTTGAGCACATCTGGGTTGTGGATCGCCTGCAGCGTCTTGGAGTCTCAAGATATTTCGTCTCAGAGATCAATGAATGTGTCGATTATAT TCATAGATATTGGACTGAAAATGGCATCTGTTGGGCGAGAAATTCTAATGTCCATGATATTGATGACACGGCCATGGGATTCAGGATACTTAGATTACAT GGGCACCAGGTTTCTGCCGATGTGTTCAAGCATTTTGAGAAAGGCGGTGAATTTTTCTGCTTCGCAGGGCAGTCAACAGGTGCTGTTACGGGAATGTTCA ACCTGTATAGGGCTTCTCAGGTTCTGTTTCCGGGAGAGAAGATACTTGAGGATGCCAAGGAATATTCATTCGAATTCCTAAGGGAAAAACAAGCTGCTAA TGAACTTCTAGATAAATGGATTATAACGAAGGACTTGCCCGGAGAGGTGGGTTTTGCATTGGAGATTCCATGGTATGCGAGCTTGCCTCGAGTGGAGACT AGATTCTTCATAGAACAGTATGGTGGCGAGGACGACGTGTGGATTGGCAAGACCCTTTACAGAATGTCATATATAAACAACAGTGAGTATCTCCAGCTGG CAAAATTAGACTACAACAACTGCCAAGCATTACATCGCATTGAATGGGAAAATTTTCAAAAGTGGTATGAAGAATGTAATCTAAGAGATTTCGGGATAAG CAGAAGAACCCTTATCTTTTCTTACTTTTTGGCAGCAGCCAGTATCTTTGAGCCGGAAAGGTCCAAAGAGCGACTTGCATGGGCTACCACTACAGTCTTG CTCGACATTGTCGGCTCTTATTTCCCTGAGAATTATAACAATTCTAGCGAGCAGAGGAGAGCCTTCATACATGAATTCAGTTACGGTATTAGCATAAATG GAAGGAGGTCGGGTAGAAAGAAGACAAGGCAGGAGCTCGTTAAGCTGCTGCTTGGAACCCTAAATCAGCTCTCTTTGGGCGCATTAGTGGTTCATGGTCG AGACATTAGCCACAGTTTACGCCATGCTTGGGAAAAGTGGCTCTTGATCTGGGAATTGGAAGGAGATAGACGCCAAGGGGAAGCAGAACTACTAGTGCAA ACAATAAATCTCACCGCCGGCTATTTGGTCTCCGAGGAGCTCTTGGCCCATCATCCTCAGTATGAACAACTCGTCGACCTGACAAACAGAATATGCTATC AACTTGATCATTACAAGAAAAACAAGGTACATTACAATGGAAGCTACAGCACTATTACCAGTAATACTGACAGAATTACAACCCCACAAATAGAATCAGA CATGCAAGAACTTGTGCAGTTAGTAGTCCAAAATCCCTCAGATGGAATAGATTCTAATATCAAGCAAACGTTCCTTCAAGTAGCCAAGAGTTTTTATTAT TCTGCAATCTGTGATCCTGGGACTATCAACTATCACATAGCTAAAGTGCTCTTTGAGAGAGTGCCTTGA
AA sequence Show only first row Show all	>Potri.005G210300.2 pacid=42803397 polypeptide=Potri.005G210300.2.p locus=Potri.005G210300 ID=Potri.005G210300.2.v4.1 annot-version=v4.1 MSSHYSSIHLLSTVPSTPRSSFSTSNNIHPLPFPAGVWLYGAKDKKDNIHTRCSAISKPRTQEYADLFQQQNGLPLINWPHDIVEDDAEEDAAKVSVAKE ISKRVRTIKAMLDMMEDGEISISAYDTAWVALVEDINGSGLPQFPSSLQWIANNQLPDGSWGDAGIFLAHDRLINTLACVVALKSWNLHQDKCEKGMLFF RDNLCKLEDENAEHMPIGFEVAFPSLLAIAKELDIEVPDDSTFLQEIYARRNLKLKRISKDIMHNVPTTLLHSLEGMRGLDWKQLIKLQCLDGSFLFSPS STAFALSQTKDKNCLEYLNKAVQRFKGGVPNVYPVDLFEHIWVVDRLQRLGVSRYFVSEINECVDYIHRYWTENGICWARNSNVHDIDDTAMGFRILRLH GHQVSADVFKHFEKGGEFFCFAGQSTGAVTGMFNLYRASQVLFPGEKILEDAKEYSFEFLREKQAANELLDKWIITKDLPGEVGFALEIPWYASLPRVET RFFIEQYGGEDDVWIGKTLYRMSYINNSEYLQLAKLDYNNCQALHRIEWENFQKWYEECNLRDFGISRRTLIFSYFLAAASIFEPERSKERLAWATTTVL LDIVGSYFPENYNNSSEQRRAFIHEFSYGISINGRRSGRKKTRQELVKLLLGTLNQLSLGALVVHGRDISHSLRHAWEKWLLIWELEGDRRQGEAELLVQ TINLTAGYLVSEELLAHHPQYEQLVDLTNRICYQLDHYKKNKVHYNGSYSTITSNTDRITTPQIESDMQELVQLVVQNPSDGIDSNIKQTFLQVAKSFYY SAICDPGTINYHIAKVLFERVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.005G210300 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	3.74	0.8356
AT5G01750			Protein of unknown function (D...		Potri.016G131300 [exp]	12.00	0.8014
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015700 [exp]	12.40	0.7924
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136601 [exp]	17.32	0.7816
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.001G032500 [exp]	18.52	0.7459
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.001G460600 [exp]	20.04	0.7360	Pt-WRKY14.2
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	21.81	0.7746
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	33.40	0.7723
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	34.58	0.7632
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G247200 [exp]	35.24	0.7854

Compare expression of checked genes

Potri.005G210300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.