Plant FIBer expression Database

Potri.005G210500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02740 298 / 2e-95 F-box/RNI-like superfamily protein (.1)
AT4G02760 275 / 2e-86 RNI-like superfamily protein (.1.2.3)
AT4G02733 173 / 9e-50 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G051800
[exp]
843 / 0 AT4G02740 304 / 8e-98 F-box/RNI-like superfamily protein (.1)
Potri.005G141800
[exp]
42 / 0.0008 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
Potri.007G048101
[exp]
42 / 0.0009 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.005G210500.3 pacid=42805672 polypeptide=Potri.005G210500.3.p locus=Potri.005G210500 ID=Potri.005G210500.3.v4.1 annot-version=v4.1
ATGGATACCCTCCTCCACACCCCGACCTCCATGGCCAAACGCCCCTGCCCTATCCCTTCCTCTCCCTCTACTCCTCCTCCAAACCCTAACAAACTCCCTA
ACATGAACAATCAAGTCGGCAACCTTCTCCAAACATTTCTTAACCTAGCTGACTCTCATTCTCTCTCCATCGACCAATCCTTTGAGCATCTCCTCGACTC
CTCCCCTTGCGATGCTGATCAGTCTCTCCTCATCGATCGCGCCCTTAAACTAGGATCTCTTCTTCTCGAAGCCGGGAACCGCTCTGCTAGGAAACGCTCT
TCCTTTCATAATTCACTCACCTGGGCTCTCCCTCCTGATCTCACCATCAAGTTATTTTCTATGCTTGATGCACAAAGCCTGTGCTATGCTGCTGCAACTT
GTTCTATGTTCTACAAATGTGCCATGGATCCCTTGTGCTATGCCAATATTGACTTGACAACTGTGGTCCCAAAAGTTAACAATGCAGTTGTGTCTACAAT
GATCCAACGTGCTGGAAAAGCCCTTCGGTCCCTTAAGCTTGGTATAGTTCCAGGTCCGACTCTGCCTCATGGATCTTGTCAACCATTGGTTTATGGAATT
AGGAATGCTGTAGAAGTATCTAACTTTTCATGGAATGATAAAAAGACCAGACAGGGGAAGGAGTCATCCACTCTTACTAGATACTGCTTAACTCCTTTAA
GTGGGGAGAATGGTGCTGCTGGGGCTGTTTTGAGAGGATTGCATCTATACAATATTGAAAGAATTGACAACACATCACTTTGTGGGGCATTGTCAGCCTG
CCCATCTCTGCTTGACCTGGAAATAATTGGCCTACATGTTGACTTGAGGCAAACATTGGTGTCAGTGAGCATGAATTGTCCCTTGATAGAGCGTTTGTTT
TTTGAATCTTCAAAAACAGGAAGAGATGACAGTTTGAAATCATCAACCTGTGTGGATCTAGTAAATAATTGTCCAAATTTAACCTCACTGGCTCTAAGAG
GTTTCAAGCTGTATGATTATAAACTTCGGATACTTGTTAAGGGATTTTGCAAACTAAAATATGTAGATTTTTCAACGTCATATTCTATCACCGGAAGCTT
TTTGAGGAACCTTGGTGGTGACATGGGTGGGAGTTTGCTGGAAGTTTTGATTTTCCGAGACTGCATGCATCTCAAAGAGTTGGAAGTTGCTCGATTATTT
GCATCAGTTCTTGCTGGGGACTTTAGATTTCTTCGATATCTTGATATATCAAACAGGGAAGGTTTGGCTGCTGCAGGTGATTCGTATGGCAGATGTTACA
GTTTAAGTATCATTCCTACAAAGCAGGTATTAGAAGAAAGGCCTGATATATGTTTGCTAGCAGAATTTCCATCAGAAGGAAGTTTTGTCGACCTTGGCCA
AATGACTGATAGCGATCTAACTAGCGAGGTCAGCCTGTCATCACAATTGAGCAGTCGTGCATCAGATGGTTTGTCATTCATGTGTACATCTGAAATCAAC
TATAGTAGTGATCAGACTAGTGGTAATGAGGAGGGGTAA
AA sequence
>Potri.005G210500.3 pacid=42805672 polypeptide=Potri.005G210500.3.p locus=Potri.005G210500 ID=Potri.005G210500.3.v4.1 annot-version=v4.1
MDTLLHTPTSMAKRPCPIPSSPSTPPPNPNKLPNMNNQVGNLLQTFLNLADSHSLSIDQSFEHLLDSSPCDADQSLLIDRALKLGSLLLEAGNRSARKRS
SFHNSLTWALPPDLTIKLFSMLDAQSLCYAAATCSMFYKCAMDPLCYANIDLTTVVPKVNNAVVSTMIQRAGKALRSLKLGIVPGPTLPHGSCQPLVYGI
RNAVEVSNFSWNDKKTRQGKESSTLTRYCLTPLSGENGAAGAVLRGLHLYNIERIDNTSLCGALSACPSLLDLEIIGLHVDLRQTLVSVSMNCPLIERLF
FESSKTGRDDSLKSSTCVDLVNNCPNLTSLALRGFKLYDYKLRILVKGFCKLKYVDFSTSYSITGSFLRNLGGDMGGSLLEVLIFRDCMHLKELEVARLF
ASVLAGDFRFLRYLDISNREGLAAAGDSYGRCYSLSIIPTKQVLEERPDICLLAEFPSEGSFVDLGQMTDSDLTSEVSLSSQLSSRASDGLSFMCTSEIN
YSSDQTSGNEEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02740 F-box/RNI-like superfamily pro... Potri.005G210500
[exp]
0 1
AT5G14610 DEAD box RNA helicase family p... Potri.017G071400
[exp]
6.63 0.6732
AT3G32940 RNA-binding KH domain-containi... Potri.003G216800
[exp]
7.21 0.7727
AT4G28190 ULT ULT1 ULTRAPETALA1, Developmental re... Potri.013G145400
[exp]
8.00 0.6361
AT2G28880 ADCS, EMB1997 embryo defective 1997, aminode... Potri.010G221500
[exp]
17.43 0.6876 PABAS
AT3G62310 RNA helicase family protein (.... Potri.014G117900
[exp]
20.49 0.6904
AT1G61210 DWA3 DWD hypersensitive to ABA 3, T... Potri.011G045500
[exp]
23.62 0.6376
AT3G26850 histone-lysine N-methyltransfe... Potri.018G051900
[exp]
29.69 0.7259
AT3G58560 DNAse I-like superfamily prote... Potri.006G195600
[exp]
35.59 0.7072
AT5G20930 TSL TOUSLED, Protein kinase superf... Potri.009G155400
[exp]
36.66 0.7070
AT2G30780 Tetratricopeptide repeat (TPR)... Potri.016G119600
[exp]
37.29 0.6945

Potri.005G210500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.