Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03140 518 / 0 splicing factor Prp18 family protein (.1) AT1G54590 352 / 2e-119 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022049 [exp] 573 / 0 AT1G03140 541 / 0.0 splicing factor Prp18 family protein (.1) Lus10042599 [exp] 488 / 1e-172 AT1G03140 467 / 3e-164 splicing factor Prp18 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02840 [poplar] [flax] Prp18 Prp18 domain PF08799 [poplar] [flax] PRP4 pre-mRNA processing factor 4 (PRP4) like
Representative CDS sequence Show only first row Show all	>Potri.005G210600.1 pacid=42804527 polypeptide=Potri.005G210600.1.p locus=Potri.005G210600 ID=Potri.005G210600.1.v4.1 annot-version=v4.1 ATGGATCTCCTGAAGCAAGAGCTCCTCAAGAAACGCCAAACCCTAGCCCAAGATACCGGCGGAAAGAAATTCTTCAAGCGATCCGAAATCCAACAAAAAG AAATCCAAAAACTCCGCGAACAAGAAAAACGCGAACTCGAAGCCAAATCCAAACGCCAATCCTCCTCCTCCTCTATCACCTCCTCCTCCACCACCACTAC TCCAAACTCCAGCGTCGCAGCCTCCACCACCACCACAACCAAAAATTCCTCTTCTACCGCCACCACATCCAAACCCCTAACCGTAGAACAAAACATCGAC AACCTCGTACTCCCCAAACAAGAAGTAATTCGCCGCTTCAGATTCCTCAAACAACCAATTACTCTCTTTGGTGAAGATGACGATGCTCGTCTTGACCGGT TAAAGTATGTTCTAAAAGCTGGACTTTTTGAGGTTGATAGTGATATGACCGAGGGGCAGACCAATGATTTTTTGCGCGATATTGCAGAGTTGAGGAAGAG GCAGAAGAGTGGGATTGTGAGTGGGAGGAAGAGGAAGGACAGAGAGGATGGAGGGGGAGAGGATGGGGAGGGAGGGGAAGGGGATGGAGAGCTTGGTGGT GAGTGTGGGGCTGGTGGGGGTGATAATGATCTGGATTCAAAGCGAATGAAGGCCAATTTTGAGGAATTGTGTGAAGAGGATAAGATCTTGGTGTTTTTTA AGAGGTTGTTGAACGAGTGGAATCAAGAATTGGATGAGATGGCTGAAGCAGAGAAAAGGACGGCGAAAGGGAAGTCAATGGTGGCAACTTTCAAGCAGTG TGCTAGGTATTTGAATCCCTTGTTCGATTTTAGTAGGAAGAAGATTCTTCCAAGTGACATTCGCCAAGGATTGCTCCTGATGGTTGAGTGCTGCATGAGG CGAGACTACTTAGCTGCAATGGATCATTATATTAGACTGGCAATTGGAAATGCACCCTGGCCAATTGGTGTTACTATGGTTGGTATCCACGAACGTTCAG CTCGTGAGAAGATTTACACCAACAGTGTGGCCCACATTATGAATGATGAAACAACTCGCAAATACTTGCAGTCAGTCAAGAGATTAATGACCTTTTGCCA ACGACGGTACCCAACCATGCCGTCTAAAGCTGTGGAGTTCAACAGCCTGGCAAATGGCAGTGATTTACAGTCGTTATTGGCAGAAGAGAGGGTTTTTGAT GGCAATCAGCCTTCAGAAGGAAGACTTCGGCTGATGCCTGCTCCGGATGAGAATTAG
AA sequence Show only first row Show all	>Potri.005G210600.1 pacid=42804527 polypeptide=Potri.005G210600.1.p locus=Potri.005G210600 ID=Potri.005G210600.1.v4.1 annot-version=v4.1 MDLLKQELLKKRQTLAQDTGGKKFFKRSEIQQKEIQKLREQEKRELEAKSKRQSSSSSITSSSTTTTPNSSVAASTTTTTKNSSSTATTSKPLTVEQNID NLVLPKQEVIRRFRFLKQPITLFGEDDDARLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELRKRQKSGIVSGRKRKDREDGGGEDGEGGEGDGELGG ECGAGGGDNDLDSKRMKANFEELCEEDKILVFFKRLLNEWNQELDEMAEAEKRTAKGKSMVATFKQCARYLNPLFDFSRKKILPSDIRQGLLLMVECCMR RDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERVFD GNQPSEGRLRLMPAPDEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03140			splicing factor Prp18 family p...		Potri.005G210600 [exp]	0	1
AT2G17670			Tetratricopeptide repeat (TPR)...		Potri.005G103300 [exp]	2.82	0.9009
AT4G38150			Pentatricopeptide repeat (PPR)...		Potri.004G209500 [exp]	8.12	0.8353
AT2G19270			unknown protein		Potri.006G075000 [exp]	8.83	0.8737
AT2G32840			proline-rich family protein (....		Potri.001G229800 [exp]	11.09	0.8699
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.006G104700 [exp]	12.00	0.8499
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.003G180700 [exp]	13.41	0.8350
AT5G10710			unknown protein		Potri.018G005900 [exp]	13.49	0.8342
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.015G017200 [exp]	14.49	0.8462
AT3G16210			F-box family protein (.1)		Potri.012G014300 [exp]	14.49	0.8181
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	14.69	0.8574

Compare expression of checked genes

Potri.005G210600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.