Plant FIBer expression Database

Potri.005G210900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02720 258 / 8e-81 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G051500
[exp]
325 / 2e-105 AT4G02720 254 / 2e-79 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042601
[exp]
297 / 2e-94 AT4G02720 60 / 2e-09 unknown protein
Lus10022052
[exp]
295 / 6e-94 AT4G02720 266 / 8e-84 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06047 Nkap_C NF-kappa-B-activating protein C-terminal domain
Representative CDS sequence
>Potri.005G210900.4 pacid=42802826 polypeptide=Potri.005G210900.4.p locus=Potri.005G210900 ID=Potri.005G210900.4.v4.1 annot-version=v4.1
ATGGGCAGGCCATTGTCCACCGTTGAAATTCCTGATAGACGATACATTCCTGACCGCCAGAACAGCCGTTACACACCAGAATCTGACGCCTCCCCTGACC
ATCGCCGCCGCCGTGACCGTGGTAGTCCCTCTTATCAAAGCTACGACGATCGCCATCGCGAAATCGATCGCGGCAGACGCCGTCGGTCGAGCTCACCCGA
CTACTCTAGAAGCCCTAGAAGAAGAACAACAAGAAGAAGCCCAAGCCCTAGGCAAAGGCAAACCCTAGATCATCCTCTCCCAAAAAAATTCGGCAAGGGC
CGGTCTTTTCTTGATAGGAATGGAAGGGAATCGGATGAGGAATCGGATGAGGAATTGAAAGGATTGAGTTTTGAGGAGAGGAGGAGGCTGAAGAGGCAGA
AGATGAGGAAGTCTATGAGTTATTGTATTTGGAATGTTTCGCCAAGTCCTCCGAGAGGGGATAATGAAGAGGAATTTGAGGAGAAAGCGGATAAGATTGA
GGAGAAGCATGGAGAGGATGAAAAAAAGAGTGATGATTCTAGCGGAAAAGAGAAGGAGAAAGGAAATAATGGAAAGGGGAGAATGGAGTCAGAGAATTCT
GGGAGTAGCGAGTCCGAGTCAGATGATTCGAGGGAGAAAAGAAGGAGGGGATTGAGTTCTAAACGTAGGAGGAGAAGGAACAGTGATAGTGAATCAGATG
TTAGTGAGAGTGAACCCGACTCTGAAGAAGATCGGAAACGGAGAAAGAAGTCCCGGAAAAGTATTAGTAGGCGGAGAAACAGTAGTAAGAGCATTGGTAG
AAGAAGAAAGAGTACAAGGAAGAAGAGTAAGTATAGTGATTCTGATTATAGTGGGAGTGAGGAGTCTGATGATGATCGTGTAAAGTCTAAGAAGAGGAGT
CGCTCTTCCGGTTCGCAATCTAAGGGGAGCAAGAAGAAGAGAACCACTGAAACAGAGGGCGAGAATCTGGATTCCAATGAGGGTTCTGGTTCTGAGAAAA
ACGAAGTAAATGATGATGATGATGCTGACAAGGCTGAAACTGATGTTGAGGCATTGATGTTTAAAGAAATGATTGAGGCACAAAAGAAACCCGCTCTGGA
TAATGAACCTGAGGTTGGGCCAATGCCCTTGCCTAGAGCTGAAGGGCATATTAGTTATGGTGGAGCTTTGAGGCCTGGTGAAGGTGATGCTATTGCTCAG
TATGTGCAGCAAGGGAAACGTATTCCACGTAGAGGTGAAGTGGGTCTTTCTGCAGACGAGATTCAGAAATTTGAGAATCTTGGGTATGTGATGAGTGGTA
GTAGGCATCAGAGGATGAATGCCATTCGTATCAGGAAAGAAAACCAAGTTTACAGTGCTGAGGATAAGCGGGCGCTGGCCATGTTTAACTATGAAGAGAA
GGCGAAGCGTGAACACAAGGTCATGGCTGATTTGCAACGGCTGGTGCAGCGTCATATTGGGGAGGATGTTGGCCCTAGCCATGATCCATTTGCTGCAAAA
GCATCCGATGATGCTGATGCTTAG
AA sequence
>Potri.005G210900.4 pacid=42802826 polypeptide=Potri.005G210900.4.p locus=Potri.005G210900 ID=Potri.005G210900.4.v4.1 annot-version=v4.1
MGRPLSTVEIPDRRYIPDRQNSRYTPESDASPDHRRRRDRGSPSYQSYDDRHREIDRGRRRRSSSPDYSRSPRRRTTRRSPSPRQRQTLDHPLPKKFGKG
RSFLDRNGRESDEESDEELKGLSFEERRRLKRQKMRKSMSYCIWNVSPSPPRGDNEEEFEEKADKIEEKHGEDEKKSDDSSGKEKEKGNNGKGRMESENS
GSSESESDDSREKRRRGLSSKRRRRRNSDSESDVSESEPDSEEDRKRRKKSRKSISRRRNSSKSIGRRRKSTRKKSKYSDSDYSGSEESDDDRVKSKKRS
RSSGSQSKGSKKKRTTETEGENLDSNEGSGSEKNEVNDDDDADKAETDVEALMFKEMIEAQKKPALDNEPEVGPMPLPRAEGHISYGGALRPGEGDAIAQ
YVQQGKRIPRRGEVGLSADEIQKFENLGYVMSGSRHQRMNAIRIRKENQVYSAEDKRALAMFNYEEKAKREHKVMADLQRLVQRHIGEDVGPSHDPFAAK
ASDDADA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02720 unknown protein Potri.005G210900
[exp]
0 1
AT5G19900 PRLI-interacting factor, putat... Potri.001G011800
[exp]
1.00 0.9024
AT5G47090 unknown protein Potri.001G149800
[exp]
1.41 0.9010
AT5G49400 zinc knuckle (CCHC-type) famil... Potri.010G142400
[exp]
1.73 0.8404
AT4G35870 early-responsive to dehydratio... Potri.005G108600
[exp]
3.74 0.8122
AT4G03430 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE... Potri.013G135300
[exp]
4.00 0.8295
AT2G36950 Heavy metal transport/detoxifi... Potri.006G124800
[exp]
11.40 0.7869
AT5G64550 loricrin-related (.1) Potri.001G206600
[exp]
19.23 0.7714
AT3G12050 Aha1 domain-containing protein... Potri.016G060100
[exp]
19.79 0.8111
Potri.014G059200
[exp]
20.24 0.8174
AT5G58040 FIP1[V], ATFIP1... homolog of yeast FIP1 [V], hom... Potri.006G187400
[exp]
26.07 0.7959

Potri.005G210900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.