Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43150 37 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152200 [exp] 91 / 2e-25 AT5G43150 41 / 9e-06 unknown protein Potri.010G088200 [exp] 88 / 5e-25 AT5G43150 40 / 8e-06 unknown protein Potri.013G037800 [exp] 72 / 6e-19 AT5G43150 39 / 2e-05 unknown protein Potri.003G187500 [exp] 37 / 5e-05 AT5G43150 51 / 8e-10 unknown protein Potri.006G103800 [exp] 35 / 0.0004 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004910 [exp] 86 / 2e-24 AT5G43150 45 / 1e-07 unknown protein Lus10010543 [exp] 86 / 2e-24 AT5G43150 45 / 1e-07 unknown protein Lus10015934 [exp] 56 / 4e-11 AT2G27410 48 / 3e-06 Domain of unknown function (DUF313) (.1) Lus10041628 [exp] 36 / 0.0003 AT5G43150 52 / 3e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G211000.1 pacid=42802308 polypeptide=Potri.005G211000.1.p locus=Potri.005G211000 ID=Potri.005G211000.1.v4.1 annot-version=v4.1 ATGGGGTGGCTTCAGTCCTTCGTCTCCCCATTGAAGAAGTTCTGGGATCGTCTTCACTCCAGCCACAGAAAGCGTACAGGGATATACATTCTGTACAAGG ATGTGAAGTCTTGCCCGTGTGAAGACGTGCATGTCCTATGGTCAATACTGGTCGAATCACATCCAGCCGCTGCTTCTTTGCAATCAAAATAA
AA sequence Show only first row Show all	>Potri.005G211000.1 pacid=42802308 polypeptide=Potri.005G211000.1.p locus=Potri.005G211000 ID=Potri.005G211000.1.v4.1 annot-version=v4.1 MGWLQSFVSPLKKFWDRLHSSHRKRTGIYILYKDVKSCPCEDVHVLWSILVESHPAAASLQSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.005G211000 [exp]	0	1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	1.41	0.9205
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	4.24	0.8893
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Potri.016G018600 [exp]	5.00	0.8419
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	7.07	0.8938
AT1G52540			Protein kinase superfamily pro...		Potri.003G032100 [exp]	8.94	0.8040
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	10.58	0.8875
AT4G28380			Leucine-rich repeat (LRR) fami...		Potri.007G139200 [exp]	10.95	0.8573
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	12.44	0.8830
AT3G07510			unknown protein		Potri.002G239500 [exp]	13.67	0.8641
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	17.54	0.8673

Compare expression of checked genes

Potri.005G211000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.