Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36740 637 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 596 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G14920 574 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 557 / 2e-175 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 363 / 5e-105 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 249 / 1e-67 PHD finger transcription factor, putative (.1) AT2G36720 191 / 6e-49 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 164 / 5e-41 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 161 / 4e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G63900 146 / 2e-36 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051400 [exp] 1974 / 0 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 612 / 0 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 599 / 0 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 384 / 1e-110 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 342 / 4e-103 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.009G072600 [exp] 295 / 2e-81 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 255 / 5e-70 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G120200 [exp] 170 / 1e-42 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 162 / 4e-40 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042602 [exp] 795 / 0 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 748 / 0 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 621 / 0 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10006110 [exp] 617 / 0 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042283 [exp] 260 / 5e-70 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 254 / 4e-68 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 241 / 4e-66 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 235 / 5e-64 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 209 / 1e-56 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10022055 [exp] 181 / 2e-48 AT5G36740 154 / 7e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G211100.2 pacid=42802420 polypeptide=Potri.005G211100.2.p locus=Potri.005G211100 ID=Potri.005G211100.2.v4.1 annot-version=v4.1 ATGAGAGAAGGGTTGAGATCTAGTGTCAATTTATTGGCGAAAATGGAGAAAAATGAGGTTTCTCCGAGCAAGGAAATGGTTACTGAGAAAGTTGGTGGTT TGAAACAAGGAGATTGTGAATTCACTGACGAGGAGAACCCGAAATTGAATCAAGAAGAGGCGTTAAAAGAAGAAATGGAAGTGGATCAGAGAGATAGGCT TAAAATCGAAGAATGTGAAGGAGGGAATGATTTGAGGGAGTGTAATGCTGTTGAGGGTAGTACGAATAGAAGGAAAAGAAGTATGGTTGATGGTGAGGGA GAGATTGAGGATGGTGGTGTTGAAAAGAAGAAGCTAAAGGAGGGTGCGGATGGTGAAAATGTGGTTGTCGTCAGGGTTCTGCGGTCAAGGTCTGTGACAA AAACTAAGAGTAGGAAGGAGATTGATAGAGGGCAGCAGACCGGAGGGAGTGATGGCTCTGAGAGGAAAAGGGTTGAGGTAAAAATAGAAGAGAGGGATCA TTCTGATGGTGAAGACAGTGGGAAATTAGATAATGAGGCCAGGGATAAATCAAAGCAAAATCATGGTAGCTCACCCAAGGACCAGAAGAGTGACAGGACT GAGAAGAGATTGGCTGAGGTGAAAAAGAAAGATAGTGATCATTCTGATGGTGAAGACCCTGACCAGTCAGATAACGATGCAGGGAGAATGTTAAAGCACA AGCGTGGGAGGCCCTCCAAGGCTCAGAAGAGTGATGGGCCTGAGAAGAAAAGGATTGAGGTGGTAAATGAAGAAAGTCATCAATCTGCTGGTACAGAGAT TGAACAGGCAGATAATGAGGCAAGGGAAAAGTTAAAGCCCAAGTGCGGGACACCCCCCAAGGTTCAGAAGAATGATGTGTCTGAGAAGAAAAGGGTTGAG GTGAAAAGGGAAGAGAGTGATCAATCTGCTGGCGAAGAGAGTGATCGAGCACATAGTGGGGCAAGGAAAATATTAAAGCATAAACATGGAATGTGCCACA AGGGGCAGAAGAGTGATGGATCCGAGAAGAAAAGAGTCAAGGTGGGTAAAGAAGGCAGCCATCAATCTGCTGGTGAAGAGAGTGAACTGTCAGGTAATGA GATGAGTGAAAAATTAAAGCCTAAGCGTGGGAGACCCCCCAAGGCTAAGGAGAGTGATGAGTCTGGGAAGAAAAGTATTGAGGTGGTTGATGGTGACTCT GCAGAATCTTCTGGTCAAGAGAGTGATGAATCTTATGGTAAAGTGGGGCAGAAGCGGAAGCCTAAGCGTGGGAGACCCAGCAAGTTGAACAAGGGTGTAA AGGTGGGTGGGCTGAGGAAAAGACAGTGGGGGGAAATGACAAGACATAATAAGAACCACAATGTGGGAGCTAGAAGTGCAGTATCTGGAAAGAAACTTGG GAAAAAATCTAATGCAACAAAGTTAGCCACAGCTAGGAAGAACAAATGCAGCAATGATGAAAAGGAAGAGGGGAGAAGTATACAGAAGGCAGTAGTGAGA GAAAAAATTATAGAACTTCTTTTGGGTGCAGGCTGGACAATTGAGCGTAGGCCTAGGAATGGTAGAGAGTACTGTGATGCTGTGTATGTTAATCCTGAAG GAAGGACTCATTGGTCTGTTACCTTGGCTTACCGGGTGCTTAAGCAGCATTATGAAGGTGGTGGTGGTGATTCAAATACTTGTAAGACTGGTTTCAAGTT TACTCCTCTACCAGATGAAGAACTCAGCATACTAGCAAAAGTAATAGGCAAGGAAAGGAGTGATAAAAATAAAAAGAAAAAGAAATGGAAGCAAGTGAAG GATGGGAAAACAGGTGAAGGAGTTGCAAAAGAGAAAAATAAGAAAGGAAAACTGCACAAGAGAAAACAGGATGCTTTGGCAATTCCCGGACGTAAGAAGT TGAAGGACAGTACAAAACGGAAATCTTCTCTCTGCGAACAGGATGACTGTGCGGGTATGTCAGATGACGGAACAACAGTCAGGGATTTTAAGCAACTCAA AACACATAATAGAAAGCGGTGTGCTCTAATGATTCGCAACTCCAAGGAGGGTGCAGGTTCAGATGGTGGTGGCTATGTGCTTTATAATGGGAAGCGAACT GTACTAGCCTGGATGATTGACATGGGCACTGTTCCATTGGCTGGAAAGGTGCAGTACTTGAAACGCAGGAAGACACGAACAGTCCTGAAGGGTAAAATCA CAACAGATGGCATTCAGTGTGATTGTTGTGGTGAAACTTTTGCAATCTCGGACTTCGAGGCTCATGCAGGCAGCAAATCCTGCCAGCCACTCAAAAACAT ATTCTTAGAGAATGGACCTTCACTCTTGCACTGCCAGCTAGAGTCATGGCATAGACAAGATGAATCTGATCGTAAAGGGTTCCATTTTGTTGATATTGAT GGTCAAGATCCAAATGATGATACATGTGGGATCTGTGGAGATGGTGGAAACCTTATTTGCTGTGATAGTTGCCCATCAACATTTCATCAAAGCTGCCTAG AGATAAAGAAGCTCCCTTCAGGGGTCTGGAATTGCACATATTGTTCATGCAAATTTTGTGGGATGGCTGGTGGGGATGCATGTCAGATGGATGAGAATGA TGCTGCTGCCCGACCTGCATTACTGACATGTTGTTTGTGTGAGGAGAAATATCACCACTCTTGTATTCCTGCTGAGGACACTATAAATGATTATCACAGC AGTCTATCCTTCTGCGGGAAGAAATGCCAAGAGTTACATGATAAACTCCAGGCGCTTCTTGGGGTTAAACATGAAATGGAAGAGGGCTTTGCATGGACTG TTGTTCGCAGATTTGATGTTGGCTCTGATATTACTCTCAGTGGAATGCATCGGAAAGTTGAATGCAATTCCAAGGTAGCTGTTGCGTTGCACATAATGGA TGAGTGCTTTTTGCCCATGCCTGACCATAGAAGTGGGGTTAACCTGATTCGTAATATTGTATATAATTTTGGGTCAAACTTCAATCGACTGAACTACTGT GGTTTTCTGACTGCAATTCTAGAGCGAGGGGATGAAGTAATCTCTGCTGCATCCATTAGGATCCATGGGAACCAGTTAGCAGAGATGCCATTCATTGGGA CCCGCCACATGTACAGGCGGCAAGGAATGTGCCGCCGGCTTCTAGGTGCAATTGAAACTGCTCTCTGCTCTCTAAATGTCGAGAAATTGGTCATACCTGC AATCTCTGAGCTAAGGGAAACCTGGACTTCTGTTTTTGGTTTTAAACAACTTGAAGGATTGAGCAAGCAAAAAATGAGGTACATGAAAATGGTGGCATTC CCTGGCGTTGATATGTTACAAAAACCTTTGTTGAAGGATCATCAGTTTGCTGAAGCAAATACGGTTCCCACTGAAGGTTTGACATCCTTGGAACTCAAGG AACAATATACCATAGATGAGATATCATGTAATTCTGATGAGAAATGTTCGTCAGTGAGATTTGATTTAAAAGGTTCTAGTGAAATTAGTATACCTCATAC TGGCAACATAAATGATCAAGCTGCTGCAGTTGAATCTGGTTCCCTTCCTGATTGCCTGAATGATATTTCCGATGTTACAAGTGAAAATACTAATCTACCT GCTTGTCCCAAGGACAAAGCTGTTGATCAATTAAGTGCGGTTTCTATTTCTTTGTGTGATGCCAATGAACAAACTAGAGAGGTGACTGAACATCAGAGTG CTGTTTCTGGTTCCATTGCTACCTCTGATTGTGAGAGGAAGCTGAAAGGGGATACACATAAGGACCAGAATGATGTTTCCAAGATCGAAAGCAAGCTGTT TGACGTATCTTTTATTGGGTCTGAAGCGGCTGACTCTCAAGGGAAGTGTCAGTGTGCTTCCAGGGAGGTTACTGAGACTGTTCCTTGTGAAGTGAAAGGT GAAGATAGCAGCGATAGACAGAACCTCGATTCGCTTGATGATGATTCTATGCCCACTTCAAAAATCATAGCAAGTCAACTCCAGTACTTTGCTTTTGGGC ACGAACTTAAAGTTTCAGATATCAATGCTGTTCACTACGAGTCCACTACCTGCAATATTTCCAGTGATATAGTTCAATCAACAACCACAACAGTTCCCCA GAAAGTGCAAGATGCTGTTTATGGTCATTGTGGGGCATTGCCTGTCGACCAAAATATTAGCACTTCTTGTCAGGGCAAGGGGCCTAATGCGAAGGACATG GTTGTCCTGGCTACTGCTGATTCCAATTCTGTAGATTCTGATGTCACTGCAAAAGCAGATCTGCAATCTTGCAGAAGTAATGGATCTTGTATTGCCACAG AGCTCATAGTGAGCCCTTGTGGAGTTGATGCGGATGGCGTCCATGACATTGAAGAAGTGTCTGACACAGTTCAAAGTGATGCGCTTTCTCCTGATGGAGG TTTAATTTCTGATGGGCCTCGGATTAATACCAAATCTTCAGAGCACCCCAATTCTGTTTCTGAGGTCGAGCCTGCTAATTTGACACAGTGCGCCTCTGAA CCTTTACGCAATTCAAGCTCTGCTCCTGGTGTTGGCCTGCACTGTGCCTCTGGTGATGGTAATTCATGCGGTGCACCTGAGGTGATAATTTTGTCAAATC AGGCTAGTTGA
AA sequence Show only first row Show all	>Potri.005G211100.2 pacid=42802420 polypeptide=Potri.005G211100.2.p locus=Potri.005G211100 ID=Potri.005G211100.2.v4.1 annot-version=v4.1 MREGLRSSVNLLAKMEKNEVSPSKEMVTEKVGGLKQGDCEFTDEENPKLNQEEALKEEMEVDQRDRLKIEECEGGNDLRECNAVEGSTNRRKRSMVDGEG EIEDGGVEKKKLKEGADGENVVVVRVLRSRSVTKTKSRKEIDRGQQTGGSDGSERKRVEVKIEERDHSDGEDSGKLDNEARDKSKQNHGSSPKDQKSDRT EKRLAEVKKKDSDHSDGEDPDQSDNDAGRMLKHKRGRPSKAQKSDGPEKKRIEVVNEESHQSAGTEIEQADNEAREKLKPKCGTPPKVQKNDVSEKKRVE VKREESDQSAGEESDRAHSGARKILKHKHGMCHKGQKSDGSEKKRVKVGKEGSHQSAGEESELSGNEMSEKLKPKRGRPPKAKESDESGKKSIEVVDGDS AESSGQESDESYGKVGQKRKPKRGRPSKLNKGVKVGGLRKRQWGEMTRHNKNHNVGARSAVSGKKLGKKSNATKLATARKNKCSNDEKEEGRSIQKAVVR EKIIELLLGAGWTIERRPRNGREYCDAVYVNPEGRTHWSVTLAYRVLKQHYEGGGGDSNTCKTGFKFTPLPDEELSILAKVIGKERSDKNKKKKKWKQVK DGKTGEGVAKEKNKKGKLHKRKQDALAIPGRKKLKDSTKRKSSLCEQDDCAGMSDDGTTVRDFKQLKTHNRKRCALMIRNSKEGAGSDGGGYVLYNGKRT VLAWMIDMGTVPLAGKVQYLKRRKTRTVLKGKITTDGIQCDCCGETFAISDFEAHAGSKSCQPLKNIFLENGPSLLHCQLESWHRQDESDRKGFHFVDID GQDPNDDTCGICGDGGNLICCDSCPSTFHQSCLEIKKLPSGVWNCTYCSCKFCGMAGGDACQMDENDAAARPALLTCCLCEEKYHHSCIPAEDTINDYHS SLSFCGKKCQELHDKLQALLGVKHEMEEGFAWTVVRRFDVGSDITLSGMHRKVECNSKVAVALHIMDECFLPMPDHRSGVNLIRNIVYNFGSNFNRLNYC GFLTAILERGDEVISAASIRIHGNQLAEMPFIGTRHMYRRQGMCRRLLGAIETALCSLNVEKLVIPAISELRETWTSVFGFKQLEGLSKQKMRYMKMVAF PGVDMLQKPLLKDHQFAEANTVPTEGLTSLELKEQYTIDEISCNSDEKCSSVRFDLKGSSEISIPHTGNINDQAAAVESGSLPDCLNDISDVTSENTNLP ACPKDKAVDQLSAVSISLCDANEQTREVTEHQSAVSGSIATSDCERKLKGDTHKDQNDVSKIESKLFDVSFIGSEAADSQGKCQCASREVTETVPCEVKG EDSSDRQNLDSLDDDSMPTSKIIASQLQYFAFGHELKVSDINAVHYESTTCNISSDIVQSTTTTVPQKVQDAVYGHCGALPVDQNISTSCQGKGPNAKDM VVLATADSNSVDSDVTAKADLQSCRSNGSCIATELIVSPCGVDADGVHDIEEVSDTVQSDALSPDGGLISDGPRINTKSSEHPNSVSEVEPANLTQCASE PLRNSSSAPGVGLHCASGDGNSCGAPEVIILSNQAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.005G211100 [exp]	0	1
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.007G022600 [exp]	1.41	0.9459
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	1.41	0.9548
AT1G76810			eukaryotic translation initiat...		Potri.019G103600 [exp]	6.00	0.9273
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G120700 [exp]	10.00	0.9190
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	13.22	0.9223
AT4G26630			DEK domain-containing chromati...		Potri.011G093200 [exp]	16.09	0.9039
AT5G43490			unknown protein		Potri.001G319500 [exp]	17.46	0.9261
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	18.00	0.8889
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.010G132600 [exp]	20.44	0.9180
ATCG01300		ATCG01300.1, RP...	ribosomal protein L23 (.1)		Potri.013G138612 [exp]	23.83	0.9213

Compare expression of checked genes

Potri.005G211100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.