Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02715 105 / 3e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050900 [exp] 286 / 1e-98 AT4G02715 96 / 1e-24 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022059 [exp] 153 / 2e-46 AT4G02715 151 / 4e-46 unknown protein Lus10042605 [exp] 149 / 6e-45 AT4G02715 154 / 4e-47 unknown protein Lus10014679 [exp] 126 / 5e-36 AT4G02715 115 / 1e-31 unknown protein Lus10006911 [exp] 120 / 8e-34 AT4G02715 122 / 6e-35 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15365 [poplar] [flax] PNRC Proline-rich nuclear receptor coactivator motif
Representative CDS sequence Show only first row Show all	>Potri.005G211400.6 pacid=42805405 polypeptide=Potri.005G211400.6.p locus=Potri.005G211400 ID=Potri.005G211400.6.v4.1 annot-version=v4.1 ATGGAGACTCTTGTTGTTGTGGCTGAACACAGGAATCAGTATTATAGCGGAGTTGAACCACACGGGCCTGCTAAATTCGGGGCTTCTCCTTCTAAGCACT TTAGGGATATCAATTGCAGGACTTTTCAATCCGGGGCGGGATTACTTCCAACCCCATTTCAGACTTCCACTACTCCTGTAACCAAAAGCACCACCCTTGC TCCTGCTTCTCACTCTCCAAAAACACCATCACCAGCTGTCAAGTTTCATTCCAATTCTCATTCTGTTGACAATGGTCGCTTGAAGACTGCTTCAAAAAGC TCTCCTATAACTTTTAATGTTAAGATTTCTAGAAAGGAAACATCTTTTAATGAGGCGATAGGTTTTGTGAATGGGAATTTACCGTTCTCGGAGCTTTGGG CTGGTCCTGCTTATTCGAACTCTCCACCACCGAGTTCTTTGCCGATTCCTAAGTTTTCAATGAGGCCACCAAAGCGAACCGTGTCACTGGATTTACCTGT GTCTGATGATGCTGATTTTGATGTGCAACCAACTGCCAAGTCTGCACCGGCTTCCCCCTCAAGGGAGCATAGCCCTTCTATAAGAGATTTGCTTCTTAGT GCTGACTCCGCGACGAAGACTTTGCGTCGCATTCTCAACCTTGATGTGGCAGGCGAGTGA
AA sequence Show only first row Show all	>Potri.005G211400.6 pacid=42805405 polypeptide=Potri.005G211400.6.p locus=Potri.005G211400 ID=Potri.005G211400.6.v4.1 annot-version=v4.1 METLVVVAEHRNQYYSGVEPHGPAKFGASPSKHFRDINCRTFQSGAGLLPTPFQTSTTPVTKSTTLAPASHSPKTPSPAVKFHSNSHSVDNGRLKTASKS SPITFNVKISRKETSFNEAIGFVNGNLPFSELWAGPAYSNSPPPSSLPIPKFSMRPPKRTVSLDLPVSDDADFDVQPTAKSAPASPSREHSPSIRDLLLS ADSATKTLRRILNLDVAGE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02715			unknown protein		Potri.005G211400 [exp]	0	1
AT5G20200			nucleoporin-related (.1)		Potri.018G129900 [exp]	3.46	0.8664
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	3.87	0.8972
AT4G12290			Copper amine oxidase family pr...		Potri.001G118300 [exp]	5.29	0.8639
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	7.87	0.8918
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	8.00	0.8611
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	8.48	0.8736
AT5G58900	MYB		Homeodomain-like transcription...		Potri.001G248800 [exp]	9.00	0.8410
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	13.41	0.8699	HMGB906,ATHMG.1
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	14.49	0.8582
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	16.09	0.8346

Compare expression of checked genes

Potri.005G211400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.