Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03110 521 / 0 TRM82, AtTRM82 tRNA modification 82, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 57 / 6e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 56 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 56 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 53 / 2e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 53 / 3e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G24130 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 52 / 7e-07 Coatomer, alpha subunit (.1) AT1G62020 51 / 1e-06 Coatomer, alpha subunit (.1) AT3G18860 48 / 1e-05 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070900 [exp] 62 / 2e-10 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 61 / 7e-10 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 59 / 5e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 53 / 1e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 53 / 2e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 51 / 1e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 50 / 2e-06 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 50 / 2e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 49 / 3e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006910 [exp] 591 / 0 AT1G03110 525 / 0.0 tRNA modification 82, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014680 [exp] 570 / 0 AT1G03110 520 / 0.0 tRNA modification 82, Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 59 / 2e-09 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 60 / 3e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 60 / 3e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 57 / 1e-08 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 55 / 7e-08 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10013452 [exp] 51 / 1e-06 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10014674 [exp] 51 / 1e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 51 / 1e-06 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.005G211600.2 pacid=42805389 polypeptide=Potri.005G211600.2.p locus=Potri.005G211600 ID=Potri.005G211600.2.v4.1 annot-version=v4.1 ATGGAGGACACTCAACCTGAAGGAGGAGAAAACAACAGAGACGTAGAGGTAGCTCCGGCCCTAATTTCAGTTCACCCGACCCAGGATTCCGTCGCTGTCG CAGTCGGGTCAGACCTCCGCTTCTTCGACCTCCGAGGGAATTGTGGGGTTACTTTGGTGGATGAAACTGGTGAGGCGTTTCATAAGGATTCTATAAGAGC CATCCGCTACGGTGCAAAAGGGAAACTGTTTGTATCAGCTGGTGATGATAAACTTGTGAAGGTTTGGTCCACTGATTCCTGGCGCTGCATTGCTTCCGTG TGTTCTGAGAAGAGAGTGAGTGCAGTTGCCATCAGCAATGATGGACTGTATGTTTGTTTTGCTGACAAATTTGGAGTTGTTTGGGTGGTGGATCTGCGTG GACTTGATGGAAATGAGACTTTGGTCAATAAAAAGGCAGCGCCATTGCTCGCGCATTATTGCAGCATCATTACTAGCCTGGAATTTTCACCTGATGGATG GTTTATCGTTACTGCAGATCGAGATTTTAAGATCCGGGTAACTGTGTTTCCCAAGAAACCTTTAGATGGAGCTCACGAGATACAAAGTTTTTGCCTTGGT CATACAGAGTTTGTGTCCTGCCTCGCCTTTCTTGTCACTGTGGATTACCCTCAGGGGTTTCTTGTGTCTGGCAGTGGCGATTCAACTGTTCGCTTGTGGG ATATTAACTCTGGAACTCTCCTTGATACCTGTGAAGTTGGTAGTAAGGCAGGAATTGTAGACTATGATGGAAGTGAAGTGAGCTGTTCCACTGTCACTGA TCTATGTACGATTCCAGGCAGTAATTTTGTTGCAGTGGCCATTCAAAGCTTGCAAGGTATACTCCTGATGAGCTGTGATCTTTCTTCTCAAACTTTTGGT GCTGTTAAGGTAGTTTCGAATATGGGAGATAGCTTCATTCCTACAAGCCTGGGCTGTAGCTCCTCTGCAGAACTATTGTGGACCATAACTGGTGTCTCTA AACTGCACGGTTCTGATCACAACTCTTTGGCCTGTGTGAGGGTTCTTTCTGGTTTCAAGAAGACCATTCCTGATGCTGCTGGGCCTGAGCTGACTTTGTT GGACGATAATGAGGTACCTGGGGCAGAGAAACTGCTTGAGAAGTTGCAGGGAAGTGTGACTGTTGAGGAAGAGGTCTTCCTAGCAGCTGCTGAAGCTGTA AAAACATCAATGTGCAATCTGTTAATTAAGAAGCAGTACACAACAGAGAAACGAGAATTTAGAAAGAGAGGTAGAAACGACAAGAAAACCAAGCAATGA
AA sequence Show only first row Show all	>Potri.005G211600.2 pacid=42805389 polypeptide=Potri.005G211600.2.p locus=Potri.005G211600 ID=Potri.005G211600.2.v4.1 annot-version=v4.1 MEDTQPEGGENNRDVEVAPALISVHPTQDSVAVAVGSDLRFFDLRGNCGVTLVDETGEAFHKDSIRAIRYGAKGKLFVSAGDDKLVKVWSTDSWRCIASV CSEKRVSAVAISNDGLYVCFADKFGVVWVVDLRGLDGNETLVNKKAAPLLAHYCSIITSLEFSPDGWFIVTADRDFKIRVTVFPKKPLDGAHEIQSFCLG HTEFVSCLAFLVTVDYPQGFLVSGSGDSTVRLWDINSGTLLDTCEVGSKAGIVDYDGSEVSCSTVTDLCTIPGSNFVAVAIQSLQGILLMSCDLSSQTFG AVKVVSNMGDSFIPTSLGCSSSAELLWTITGVSKLHGSDHNSLACVRVLSGFKKTIPDAAGPELTLLDDNEVPGAEKLLEKLQGSVTVEEEVFLAAAEAV KTSMCNLLIKKQYTTEKREFRKRGRNDKKTKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	0	1
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	1.00	0.8550	Pt-PURE.2
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	3.46	0.8194
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	5.00	0.8241
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	6.63	0.8342
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	6.92	0.8358
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	7.34	0.7910
AT1G63810			unknown protein		Potri.007G024600 [exp]	9.38	0.7920
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	13.56	0.7601
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	14.49	0.7766	Pt-LON_ARA_ARA.2
AT3G23940			dehydratase family (.1.2)		Potri.003G176600 [exp]	14.69	0.7669

Compare expression of checked genes

Potri.005G211600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.