Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63220 510 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 116 / 3e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 107 / 6e-26 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G24540 98 / 8e-23 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 97 / 2e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 94 / 3e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 92 / 7e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 89 / 1e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 89 / 1e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 84 / 9e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050600 [exp] 631 / 0 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 130 / 1e-34 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 118 / 3e-30 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 117 / 1e-29 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 109 / 8e-27 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G196900 [exp] 97 / 9e-23 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 97 / 3e-22 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 93 / 4e-21 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.003G217700 [exp] 93 / 9e-21 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022061 [exp] 525 / 0 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10042607 [exp] 272 / 2e-90 AT3G63220 298 / 1e-100 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013899 [exp] 130 / 9e-34 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 124 / 3e-32 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 98 / 1e-22 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 97 / 3e-22 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10001071 [exp] 96 / 1e-21 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 96 / 2e-21 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 91 / 2e-20 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 91 / 3e-20 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.005G211700.2 pacid=42804343 polypeptide=Potri.005G211700.2.p locus=Potri.005G211700 ID=Potri.005G211700.2.v4.1 annot-version=v4.1 ATGTCTGAACTGATTGAAGGTCTTCCAGACGCTGTTGCCATCAGGTGCATTGCACGGGTTCCCTTCTACCTCCACCCCAAGTTAGAGCTCGTTTCTCGTT CATGGCGAGCTGTTGTGCGTAGCCCTGAGCTGTTTAAAGCCCGGCAGGAGGTTGGTTCAGCAGAGGATCTGCTATGTGTGTGCGCTTTCGATCCCGAGAA TTTGTGGCAGCTTTATGACCCTCACCGAGACCTTTGGATTACCCTTCCTGTTCTCCCTTCTAAAATCAGACACCTTGCCCACTTTGGTGTTGTCTCTAGC GCGGGAAAGCTATTTGTGCTTGGTGGTGGTAGTGATGCTGTTGACCCGTTAACTGGTGATCAAGATGGAAGCTTTGCAACAAATGAAGTGTGGTCATATG ACCCTGTATTACGACAATGGGCAGCACGTGCATCTATGCTTGTGCCCCGTGCAATGTTTGCATGCGGTACTTTGAATGGAAAGATTGTGGTTGCAGGTGG TTTCACCAGCTGCCGAAAATCAATTTCTCAAGCGGAAATGTATGATCCAGAGAAGGATGTTTGGATCCCAATACCTGATCTCCACCGGACTCACAATTCA ACATGCTCTGGAGTAGTTATTGGGGGAAAGTTGCATGTCTTGCACAGGGGCTTGTCAACAGTACAAGTTTTGGACAATGTAGGGTCTGGGTGGACAGTTG AGGATTATGGTTGGCTCCAAGGTCCAATGGCAGTTGTTCATGATGCTCTCTATGTGATGAGCCATGGACTGATTTTCAAGCAGGAAGGGAAAACCAGGAA AGTAGTGGTTTCAGCATCTGAGTTCCGGAAAAGGATTGGATTTGCAATGATGGGGCTTGGGGATGACATATATGTGATTGGAGGGGTGATTGGGCCCGAC CGATGGAATTGGGATATTAGGCCAATGTCTGATGTTGATATCTTAACAGTTGGGGGTGACAGACCTACATGGCGCCAGGCAACTCCAATGACAAGGTGCC GAGGAACAATCCTTGGGTGTACACAGCTGAGAATTTAG
AA sequence Show only first row Show all	>Potri.005G211700.2 pacid=42804343 polypeptide=Potri.005G211700.2.p locus=Potri.005G211700 ID=Potri.005G211700.2.v4.1 annot-version=v4.1 MSELIEGLPDAVAIRCIARVPFYLHPKLELVSRSWRAVVRSPELFKARQEVGSAEDLLCVCAFDPENLWQLYDPHRDLWITLPVLPSKIRHLAHFGVVSS AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVLRQWAARASMLVPRAMFACGTLNGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPIPDLHRTHNS TCSGVVIGGKLHVLHRGLSTVQVLDNVGSGWTVEDYGWLQGPMAVVHDALYVMSHGLIFKQEGKTRKVVVSASEFRKRIGFAMMGLGDDIYVIGGVIGPD RWNWDIRPMSDVDILTVGGDRPTWRQATPMTRCRGTILGCTQLRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63220			Galactose oxidase/kelch repeat...		Potri.005G211700 [exp]	0	1
AT1G75400			RING/U-box superfamily protein...		Potri.005G231500 [exp]	13.78	0.6603
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.006G003100 [exp]	15.26	0.7230
AT1G60995			unknown protein		Potri.001G211700 [exp]	20.00	0.6882
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Potri.002G038300 [exp]	23.45	0.7211	Pt-ATTIM44.1
AT3G26000			Ribonuclease inhibitor (.1)		Potri.001G337300 [exp]	27.87	0.7138
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.001G136000 [exp]	62.20	0.6776
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	80.46	0.6714
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.015G138500 [exp]	81.20	0.6584
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074400 [exp]	98.45	0.6612
AT1G13460			Protein phosphatase 2A regulat...		Potri.017G070100 [exp]	100.44	0.6471

Compare expression of checked genes

Potri.005G211700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.