Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22640 76 / 2e-15 PAP85 cupin family protein (.1) AT2G18540 59 / 8e-10 RmlC-like cupins superfamily protein (.1) AT4G36700 54 / 5e-08 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002500 [exp] 183 / 1e-54 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.009G054700 [exp] 50 / 1e-06 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G029100 [exp] 50 / 1e-06 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.001G259208 [exp] 45 / 2e-05 AT2G28490 0 / 1 RmlC-like cupins superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042615 [exp] 182 / 9e-54 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10042617 [exp] 175 / 6e-51 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10022070 [exp] 152 / 2e-42 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10022072 [exp] 105 / 4e-27 AT3G22640 114 / 4e-29 cupin family protein (.1) Lus10041722 [exp] 60 / 5e-10 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 56 / 1e-08 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00190 [poplar] [flax] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Potri.005G212333.1 pacid=42804017 polypeptide=Potri.005G212333.1.p locus=Potri.005G212333 ID=Potri.005G212333.1.v4.1 annot-version=v4.1 ATGGCTTTAGGTTCTTATGGAAGTGTTCTCAAATTGGCCATAACAAGAAGATCATATGGAAGGCTGGAGAGAATCTTCAAACAACAGCAAGGAGGAATTG TCAAAGCTTCCAAGGAACAGATCCAGGCCTTGGGCCACGGTGAGGAAGGTGGTCATGGCGGTGGTGGCCTGTGGCCTTTCCCAACAGGTGGGTCAAGCGG CCCATTCAATATTTTCGACAAGGATCCTGTCAAAAGAAACAACTATGGCCAACTCTTTGAAGCCAAACCTAAAGATAGCGAGCAGCTCAGGGACCTTGAC CTTATAGTCTCTTTGGCCAACATCACTCGAGGATCTATGGCTGGACCCTACTACAACTCAAAGGCAACCATGATATCCATTGTTTTGGAAGTGGCCACTG TGGCTTCCGAAAATAGCAACCTGGAGGTGCTTTGCTTTGAGGTCTATGCAAAAGGAAACGTAAGATACCCTCTTGCAGGGAAATGGAACGTTATCGGCGA GATGGACAGGGAAGCGAAAGAGTTGGCCTATGGTGTGCCAGCAAAAGAAGTGGACCAAATTTTCGGAAAACAACAAGAAGAGTTCTTCTTCCCGGGGCCA AGAAGGCAGCGCAGAGAAGCCAGAAGCCAGCAAAGCCAAACTAACAATGAACGATTGATCTTCACGCTTTCAGAGACCTTCTGCTCTCCCTTTGCCAACC ATCAGGGACAGCAAGATGATAATTTCCGTGATTGTTATCAAACCCGCAGTATGTTGAACTCTTCTTTGCTTGGCATGGTACTGCTTGTTACCTACATGAA TGGTTGA
AA sequence Show only first row Show all	>Potri.005G212333.1 pacid=42804017 polypeptide=Potri.005G212333.1.p locus=Potri.005G212333 ID=Potri.005G212333.1.v4.1 annot-version=v4.1 MALGSYGSVLKLAITRRSYGRLERIFKQQQGGIVKASKEQIQALGHGEEGGHGGGGLWPFPTGGSSGPFNIFDKDPVKRNNYGQLFEAKPKDSEQLRDLD LIVSLANITRGSMAGPYYNSKATMISIVLEVATVASENSNLEVLCFEVYAKGNVRYPLAGKWNVIGEMDREAKELAYGVPAKEVDQIFGKQQEEFFFPGP RRQRREARSQQSQTNNERLIFTLSETFCSPFANHQGQQDDNFRDCYQTRSMLNSSLLGMVLLVTYMNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22640		PAP85	cupin family protein (.1)		Potri.005G212333 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.019G003942 [exp]	5.56	0.7366
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	8.66	0.7237
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	12.24	0.7237
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	13.22	0.7237	FUCT3.1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	17.88	0.6732
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	23.36	0.6280
					Potri.019G002628 [exp]	31.63	0.6669
					Potri.010G007833 [exp]	32.49	0.6217
AT5G36930			Disease resistance protein (TI...		Potri.019G000657 [exp]	34.24	0.6154
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028901 [exp]	41.74	0.6024

Compare expression of checked genes

Potri.005G212333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.