Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63240 778 / 0 DNAse I-like superfamily protein (.1) AT2G32010 772 / 0 CVL1 CVP2 like 1 (.1.2) AT1G05470 749 / 0 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 425 / 1e-144 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 393 / 4e-132 DNAse I-like superfamily protein (.1.2) AT4G18010 372 / 6e-122 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G37440 315 / 1e-102 DNAse I-like superfamily protein (.1.2) AT1G71710 282 / 8e-87 DNAse I-like superfamily protein (.1.2) AT1G34120 274 / 1e-84 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G01900 268 / 3e-84 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050000 [exp] 1061 / 0 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 826 / 0 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 824 / 0 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.005G078000 [exp] 442 / 5e-150 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 441 / 2e-149 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 431 / 2e-146 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 415 / 1e-140 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.017G074200 [exp] 327 / 2e-106 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.005G197800 [exp] 298 / 3e-93 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006904 [exp] 792 / 0 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 769 / 0 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10014684 [exp] 714 / 0 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10042619 [exp] 691 / 0 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10006597 [exp] 502 / 6e-176 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10033398 [exp] 416 / 2e-140 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 413 / 2e-139 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 396 / 4e-133 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10011041 [exp] 391 / 2e-129 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 389 / 7e-129 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.005G212700.1 pacid=42805565 polypeptide=Potri.005G212700.1.p locus=Potri.005G212700 ID=Potri.005G212700.1.v4.1 annot-version=v4.1 ATGAGAGATGAGAACTCGAAGAAGAGCAAGCTTTCATGGCCTAAGACACTGGTCAAGAAGTGGTTCAATATCAAGAGCAAAGCTGAGGAATTTCAAGCAG ATGATGTCCTTTACGGAGGTGGCGGTGAAGAGTGGAATCACAACTTCTCAGAGAGAGAAGCATGCACCATCAAGAAAAGCAAAACAGAGACATCATACAG GAGGCACTCTGGTGGAGTGCAGCGAGGCAAAATTGACCTTGATGCTGCACAAGTTACAGATGTGAACAATTATAGGATATTTGTAGCAACTTGGAATGTC GCTGGAAAATCTCCTCCAAGTCATTTGAACCTTGAGGATTGGCTTCATACTTCACCTCCTGCTGATATTTATGTTCTTGGGTTTCAAGAAATTGTGCCTT TGAATGCTGGAAATGTTTTGGGCACAGAAGACAATGGACCGGGCAAGAAATGGCTAGCTCTTATTAGGAAGACTCTAAATAGCCTTCCTGGTACCAGTTG GGGTTACCATACTCCTTCACCAGTCTCTGACCCAATTGTAGAATTGGATGCAGACTTTGAGGGATCAACGAGGCAGAAAGCCTCATCTTTCTTCCATCGC CGTTCCTTTCAGTCCCTGAGCCGCAGCATGAGAATGGATGGTGACATGGTGATACCACAACCTAAACTTGATCGACGTTTTAGTGTCTGTGACAGGGTTA TCTTTGGGAATAGACCGAGTGACTATGATCCCAATTACCAATGGGGTTCCTCTGATGATGAGAATGGACCAGGGGATTCACCATTGGCTACTCAACACTC GCCAATTGATTACAGTGGATCCTTGTCAATGGAGGATAGAGATAGACAAACAGGCCAGTCAAGGTACTGTTTGGTGGCCTGTAAGCAAATGGTTGGAGTA TTTCTAACAGTATGGGTAAAGAGCGATCTTAGAGATGATGTTCGCAATCTCAAAGTGTCTTGTGTGGGCAGAGGATTGATGGGTTATCTCGGAAACAAGG GCTCGATTTCAATTAGCATGGCATTGCACCAAACAAGCTTTTGCTTCATCTGTAGCCATTTGACATCTGGGCAGAAGGAGGGAGACGAGCTGCGGAGAAA CTCTGATGTTATGGAGATCCTTAGGAAGACAAGGTTTCCTAGAGTTCATTCCAGAGGAGACAAAAACTCCCCTCAAACAATTCTAGAGCATGATCGAATC ATTTGGCTTGGTGATTTGAATTATCGGATTGCCTTGTCTTATCGTGCCGTGAAAACTCTTGTCGAGATGCAAAATTGGAGGGCGTTGTTAGAGAATGACC AGCTTCGGATAGAGCAGGGACGAGGGCGAGTTTTTGATGGATGGAATGAAGGCAAGATATATTTCCCTCCCACATACAAGTATTCCAATAACTCAGATAG ATATGCAGGGGATGATAGGCACCCGAAGGAGAAACGAAGGACTCCTGCATGGTGTGATCGTATATTATGGTATGGAAGGGGCCTCACTCAGTTATCTTAT GTACGTGGGGAGTCAAGGTTCTCAGATCACAGACCAGTTTGTGGGGTATTTTTGGCTGAGGTTGAGTCTATAAATCGTAGCCGAATAAAGAAAAGCATGA GTTGTTCCAATTCTAGAATTGAGGTAGAAGAGCTGTTGCCGCACTTACATGGATACACCGAATTCAATTTCTTTTGA
AA sequence Show only first row Show all	>Potri.005G212700.1 pacid=42805565 polypeptide=Potri.005G212700.1.p locus=Potri.005G212700 ID=Potri.005G212700.1.v4.1 annot-version=v4.1 MRDENSKKSKLSWPKTLVKKWFNIKSKAEEFQADDVLYGGGGEEWNHNFSEREACTIKKSKTETSYRRHSGGVQRGKIDLDAAQVTDVNNYRIFVATWNV AGKSPPSHLNLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPGKKWLALIRKTLNSLPGTSWGYHTPSPVSDPIVELDADFEGSTRQKASSFFHR RSFQSLSRSMRMDGDMVIPQPKLDRRFSVCDRVIFGNRPSDYDPNYQWGSSDDENGPGDSPLATQHSPIDYSGSLSMEDRDRQTGQSRYCLVACKQMVGV FLTVWVKSDLRDDVRNLKVSCVGRGLMGYLGNKGSISISMALHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVHSRGDKNSPQTILEHDRI IWLGDLNYRIALSYRAVKTLVEMQNWRALLENDQLRIEQGRGRVFDGWNEGKIYFPPTYKYSNNSDRYAGDDRHPKEKRRTPAWCDRILWYGRGLTQLSY VRGESRFSDHRPVCGVFLAEVESINRSRIKKSMSCSNSRIEVEELLPHLHGYTEFNFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63240			DNAse I-like superfamily prote...		Potri.005G212700 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Potri.005G202200 [exp]	2.23	0.8800
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.009G109800 [exp]	2.44	0.8833
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.018G146200 [exp]	3.74	0.8753
					Potri.012G115400 [exp]	7.21	0.8386
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.005G006800 [exp]	8.24	0.8934
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Potri.019G063700 [exp]	8.60	0.7847
AT1G30820			CTP synthase family protein (....		Potri.001G073100 [exp]	9.79	0.8734
					Potri.017G080900 [exp]	12.48	0.8825
AT2G05760			Xanthine/uracil permease famil...		Potri.014G157800 [exp]	12.72	0.8370
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.013G148600 [exp]	13.07	0.7990

Compare expression of checked genes

Potri.005G212700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.