Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26110 401 / 4e-144 Protein kinase superfamily protein (.1.2) AT4G28860 41 / 0.0003 CKL4 casein kinase I-like 4 (.1.2) AT4G28880 41 / 0.0004 CKL3 casein kinase I-like 3 (.1) AT5G01850 40 / 0.0007 Protein kinase superfamily protein (.1) AT5G66710 40 / 0.0008 Protein kinase superfamily protein (.1) AT1G08120 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049900 [exp] 447 / 3e-162 AT5G26110 405 / 9e-146 Protein kinase superfamily protein (.1.2) Potri.003G130000 [exp] 41 / 0.0003 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.001G043700 [exp] 41 / 0.0004 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.003G183100 [exp] 40 / 0.0009 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006903 [exp] 383 / 2e-136 AT5G26110 382 / 2e-136 Protein kinase superfamily protein (.1.2) Lus10014684 [exp] 384 / 6e-130 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10025154 [exp] 42 / 0.0001 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10025236 [exp] 41 / 0.0004 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G212800.3 pacid=42804916 polypeptide=Potri.005G212800.3.p locus=Potri.005G212800 ID=Potri.005G212800.3.v4.1 annot-version=v4.1 ATGGAGATAGATGCTGAAGAGGTCAAAGATAGCTCCCTCATTTTGATCAAGCAAGGAGCTGAAGCGAGGGTTTTTGAGTCAAATTTTGTTGGAAGGAGGT CTATTGTAAAGGAACGTTTCTCGAAGAAGTACAGGCATCCAACTCTGGATTCTAAACTTACTCTCAAGCGTTTAAATGCGGAAGCTAGATGTATGACAAA GGCAAGACGACTAGGGGTGTCTACTCCTGTGTTGTATGCTGTGGATCCACTTCTGCATTCTCTAACATTTGAGTATGTGGAGGGTCCTTCTGTGAAAGAT GTCTTCCTTGAATTCGGGTTACATGGTATTGTGGAAGAACGATTGGATGACATCGCAATGCAGATTGGCGATTCAATTGGAAAACTACATGACGGTGGTC TTATTCATGGTGACTTGACCACATCAAATATGCTACTTCGGATGGGTACCAATCAATTGGTCCTTATTGATTTCGGCCTTAGCTTCACATCAACCCTCCC TGAGGACAAAGCTGTTGATTTATATGTACTGGAACGAGCCTTACTTTCAATGCATTCTTCATGTGGAAATGTGATGGACCGCATTCTCGCCGGGTACAGA AAGTCCTCAAAGCAGTGGTCATCTACGTTGAACAAGCTAGCTCAAGTTCGACAAAGGGGTCGAAAGCGCACCATGATTGGATAA
AA sequence Show only first row Show all	>Potri.005G212800.3 pacid=42804916 polypeptide=Potri.005G212800.3.p locus=Potri.005G212800 ID=Potri.005G212800.3.v4.1 annot-version=v4.1 MEIDAEEVKDSSLILIKQGAEARVFESNFVGRRSIVKERFSKKYRHPTLDSKLTLKRLNAEARCMTKARRLGVSTPVLYAVDPLLHSLTFEYVEGPSVKD VFLEFGLHGIVEERLDDIAMQIGDSIGKLHDGGLIHGDLTTSNMLLRMGTNQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILAGYR KSSKQWSSTLNKLAQVRQRGRKRTMIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26110			Protein kinase superfamily pro...		Potri.005G212800 [exp]	0	1
AT3G57280			Transmembrane proteins 14C (.1...		Potri.001G139800 [exp]	8.94	0.8650
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.019G133101 [exp]	9.59	0.8781
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.005G221100 [exp]	10.90	0.8512
AT4G24500			hydroxyproline-rich glycoprote...		Potri.005G153300 [exp]	11.70	0.8807
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Potri.008G205400 [exp]	28.72	0.8470
AT5G11480			P-loop containing nucleoside t...		Potri.018G037000 [exp]	28.91	0.8720
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.002G114600 [exp]	36.02	0.8576
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015300 [exp]	36.48	0.8189
AT2G37000	TCP	TCP11	TCP family transcription facto...		Potri.016G094800 [exp]	38.52	0.8446
AT5G20300		Toc90	translocon at the outer envelo...		Potri.018G123300 [exp]	41.56	0.8619

Compare expression of checked genes

Potri.005G212800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.