Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07130 182 / 2e-59 STN1, ATSTN1 Nucleic acid-binding, OB-fold-like protein (.1) AT2G24490 44 / 2e-05 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) AT3G02920 44 / 2e-05 ATRPA32B Replication protein A, subunit RPA32 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G167600 [exp] 45 / 4e-06 AT3G02920 219 / 9e-71 Replication protein A, subunit RPA32 (.1.2) Potri.018G091700 [exp] 45 / 7e-06 AT3G02920 246 / 3e-81 Replication protein A, subunit RPA32 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042621 [exp] 239 / 7e-82 AT1G07130 169 / 2e-54 Nucleic acid-binding, OB-fold-like protein (.1) Lus10022075 [exp] 206 / 5e-69 AT1G07130 150 / 4e-47 Nucleic acid-binding, OB-fold-like protein (.1) Lus10019976 [exp] 43 / 3e-05 AT3G02920 258 / 8e-86 Replication protein A, subunit RPA32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G212900.2 pacid=42803295 polypeptide=Potri.005G212900.2.p locus=Potri.005G212900 ID=Potri.005G212900.2.v4.1 annot-version=v4.1 ATGGATCAGAGACTGCAAAACACACACGTAAAGCTCTTAGCCTTCGATCTCCTTTCTCTAGCCCAAACTCCCTCGTTCTCCACCTACGACCCGATCACCT TCACTCGCAAAAACACTACCATCTCCCGCACCGAAATCCTAGGCGTCATCACCTCCCGCGAGCTAAAACCAAACAAATTTCTCAAATTCACAATTGACGA CGGCACTGGCTGCGTCACCTGCGTTCTCTGGCTCAACCAGCTCACCTCTCCTTACTTTTCACGCCGTAATCCTGCTAATGTTAAATTAATTGCTGACATG GCTGCTCATTTTGCATCGGAGATTAAAATCGGACTCGTGGCTAGAGTTCGTGGCAGGATTGCAGGATACAGAGGTGCGGTGCAGGTTACGGTGTCTGATG TTGTGGTCGAGAGGGATCCTAACGTGGAGGCTTTTCATTGGTTGGATTGTATTAGGTTGGCCCGTAATTGTTATAATGTGGTTGCTGGTGGCGCCTTTTA A
AA sequence Show only first row Show all	>Potri.005G212900.2 pacid=42803295 polypeptide=Potri.005G212900.2.p locus=Potri.005G212900 ID=Potri.005G212900.2.v4.1 annot-version=v4.1 MDQRLQNTHVKLLAFDLLSLAQTPSFSTYDPITFTRKNTTISRTEILGVITSRELKPNKFLKFTIDDGTGCVTCVLWLNQLTSPYFSRRNPANVKLIADM AAHFASEIKIGLVARVRGRIAGYRGAVQVTVSDVVVERDPNVEAFHWLDCIRLARNCYNVVAGGAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Potri.005G212900 [exp]	0	1
					Potri.003G084300 [exp]	4.89	0.8436
AT3G47300		SELT	SELT-like protein precursor (....		Potri.001G253000 [exp]	5.47	0.8592
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.019G039500 [exp]	6.32	0.8692
					Potri.006G273732 [exp]	8.00	0.9123
AT1G78895			Reticulon family protein (.1)		Potri.008G004200 [exp]	9.21	0.8827
					Potri.001G355650 [exp]	12.48	0.8741
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.007G078500 [exp]	23.62	0.8042
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.002G105500 [exp]	24.20	0.6965
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.008G211200 [exp]	24.45	0.8199
AT3G62140			unknown protein		Potri.014G112900 [exp]	28.01	0.7402

Compare expression of checked genes

Potri.005G212900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.