Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HMT5,SMTA.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63250 533 / 0 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G22740 500 / 3e-179 HMT3 homocysteine S-methyltransferase 3 (.1) AT3G25900 384 / 5e-134 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049800 [exp] 647 / 0 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G083600 [exp] 525 / 0 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.008G155900 [exp] 496 / 1e-177 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1) Potri.010G125200 [exp] 376 / 1e-130 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014686 [exp] 567 / 0 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10039356 [exp] 499 / 6e-179 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10006901 [exp] 469 / 3e-168 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10006602 [exp] 448 / 4e-159 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10041451 [exp] 384 / 4e-133 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10034320 [exp] 382 / 6e-133 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [poplar] [flax] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G213100.4 pacid=42804250 polypeptide=Potri.005G213100.4.p locus=Potri.005G213100 ID=Potri.005G213100.4.v4.1 annot-version=v4.1 ATGGGACATCCAGCCGCCGAGACCTCGTCCTTTATGACTGATTTCCTCCGCCAATCAGGCGGCGTCGCCATTATCGACGGTGGTCTCGCGACGGAGCTCG AACGACACGGCGCTGACCTCAATGATCCTCTCTGGAGTGCCAAGTGTCTTCTTACTTCCCCTCATCTCGTTCGTGAGGTACACCTTGACTATCTTGAAGC TGGTGCAGATATTATCATCACAGCATCTTATCAGGCCACCATCCAGGGATTTGAGGCAAAAGGTTTCTCTGGTGAAGAAAGTGAATCCTTGCTCAGGAAA AGCGTGAAAATTGCATGTGAGGCAAGGGATATTTATTATGACAGATGCCAAAAAGGTTCTCCTGATAGCAATAATGGTAGGGTTCTGAAACAACGACCTA TTTTAGTTGCAGCTTCCATTGGAAGTTATGGAGCTTATTTAGCTGATGGATCCGAGTACAGTGGGAACTATGGCGATGCAATTACCCTTGAAACCTTGAA AGATTTTCATCGCAGAAGGGTACAGATTCTTGCAGAATCAGGTGCTGACCTCATAGCATTTGAAACAGTTCCAAATAAAGTAGAAGCTCAGGCTTATGTT GAGCTCTTGAAGGAAGAAGACATAAAGATTCCTGCATGGTTCTCTTTTAACTCTAAGGATGGCGTTAACGTGGTTAGCGGTGACTCTTTGCTTGACTGTG CTTCAATTGCTGAATCATGCCAGAATGTAGTTGCAGTGGGGATCAACTGCACACCTCCTAGATTTATTCATGGACTGATTTTGTCTATTAAGAAGGTGAC TACAAAACCAATACTTATTTATCCAAACAGTGGAGAGAGTTACGATGGCAAGCGAAAGGAATGGGTGCAAAACACAGGCATATCAGATCAAGATTTTGTA TCATATGTAAACAAATGGTGTGAGATTGGGGCTGCCCTTGTTGGAGGCTGTTGCAGAACAACTCCCAATACTATCAGAGCCATATACAGGACTCTTTCCA GTAGATCTCCTGCTCCATCCTCATAG
AA sequence Show only first row Show all	>Potri.005G213100.4 pacid=42804250 polypeptide=Potri.005G213100.4.p locus=Potri.005G213100 ID=Potri.005G213100.4.v4.1 annot-version=v4.1 MGHPAAETSSFMTDFLRQSGGVAIIDGGLATELERHGADLNDPLWSAKCLLTSPHLVREVHLDYLEAGADIIITASYQATIQGFEAKGFSGEESESLLRK SVKIACEARDIYYDRCQKGSPDSNNGRVLKQRPILVAASIGSYGAYLADGSEYSGNYGDAITLETLKDFHRRRVQILAESGADLIAFETVPNKVEAQAYV ELLKEEDIKIPAWFSFNSKDGVNVVSGDSLLDCASIAESCQNVVAVGINCTPPRFIHGLILSIKKVTTKPILIYPNSGESYDGKRKEWVQNTGISDQDFV SYVNKWCEIGAALVGGCCRTTPNTIRAIYRTLSSRSPAPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.005G213100 [exp]	0	1	HMT5,SMTA.2
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.005G226100 [exp]	3.00	0.7598
AT1G16900			Alg9-like mannosyltransferase ...		Potri.011G110800 [exp]	9.79	0.7012
AT3G49910			Translation protein SH3-like f...		Potri.007G085200 [exp]	10.09	0.7338	Pt-RPL26.2
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Potri.004G094400 [exp]	14.00	0.6410
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.009G093100 [exp]	17.66	0.6446
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	18.16	0.6123
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	21.90	0.6951
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	23.66	0.6969
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	25.19	0.7138
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	26.49	0.6770

Compare expression of checked genes

Potri.005G213100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.