Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22750 575 / 0 Protein kinase superfamily protein (.1) AT4G14780 553 / 0 Protein kinase superfamily protein (.1) AT3G01490 512 / 0 Protein kinase superfamily protein (.1) AT5G50000 511 / 0 Protein kinase superfamily protein (.1) AT3G63260 509 / 0 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 238 / 1e-74 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 233 / 7e-73 Protein kinase superfamily protein (.1) AT5G58950 211 / 5e-63 Protein kinase superfamily protein (.1) AT1G62400 206 / 5e-63 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G17700 210 / 1e-62 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049700 [exp] 733 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 595 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 595 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 512 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 509 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 507 / 1e-180 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 504 / 3e-179 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 241 / 1e-75 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 241 / 1e-75 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042622 [exp] 632 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 582 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 576 / 0 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 571 / 0 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 504 / 2e-179 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 503 / 1e-178 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 487 / 4e-172 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 255 / 2e-81 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10020374 [exp] 234 / 6e-73 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10030868 [exp] 223 / 2e-69 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G213200.1 pacid=42803175 polypeptide=Potri.005G213200.1.p locus=Potri.005G213200 ID=Potri.005G213200.1.v4.1 annot-version=v4.1 ATGGAATCAAGCAATTTAAAGGAAGCAGAAGGGGCAATGAAGGGAAAGAAAAGCAATACCCATCAAGAAGCAGAAACTGCCTCAACTGCTAAAGAAAAGA AATTGGGCTCAAAAGAGGGCAGTGTGAGCAATAAAGAACTGTACTTTAGAGCAGATAAAATAGATTTCAAGAGCTGGGATATTCAGCTAGAGAATCATTT AAGCCGTGCTTGGTCAAGGGATAGGGAAGTGCAACCAACAAGAAAGGAAGAGTGGGAGATTGATTTGGGAAAATTGGATATAAGGCATGTGATTTCTTAT GGGACTTATGGGACTGTGTATAGAGGCAATTATGACGGCCAAGATGTTGCTGTGAAGGTATTGGACTGGGGAGAGGATGGCATTGCCACTGCTGCTGAAA CTGCTGCTCTCCGGGCATCATTCAAGCAAGAGGTTGCTGTTTGGCATAAGCTTGACCATCCTAACGTTACGAAGTTTGTTGGAGCTTCAATGGGAACTTC CAATCTTAAGATCCCTTCCAAAAGTTCTTCAAGTGATAGCGTCAATTCTCCTCCTGCTAGGGCATGTTGTGTTGTTGTTGAGTACCTTCCAGGTGGGACG CTAAAGAAATTTTTAATCAGAAATAGGAGAAAGAAACTTGCCTTTAAGATTGTGATTCAACTTGCTTTGGACTTATCTAGGGGTTTGAGCTACCTGCACT CTAAAAAGATTGTACATCGTGATGTTAAGACAGAAAATATGCTGTTAGATGCTACTAGAACTTTGAAAATTGCTGATTTTGGCGTTGCTCGAGTTGAGGC TCAGAACCCAAGGGACATGACTGGGGAAACTGGCACTCTTGGATACATGGCCCCTGAGGTCCTGGATGGTAAGCCTTACAACAGGAAATGCGATGTATAC AGCTTTGGTATATGCTTGTGGGAAACCTATTGCTGTGACATGCCTTATCCAGATCTTAGTTTTGCAGAAGTTTCATCTGCAGTTGTTCGACAGCATTTGA GGCCAGAAATTCCTAGATGTTGCCCAAGTTCATTGGCAAGTGTCATGCGGAAATGTTGGGATGCAAATTCAGAGAAGCGGCCTGAGATGGACGAGGTAGT TAGGCTGCTCGAAGCAATAGATACAAGCAAAGGGGGTGGCATGTTACCCGAAGATCAATCAACTGGCTGCTTGTGTTTTACCCCAGCTCGTGGTCCTTAA
AA sequence Show only first row Show all	>Potri.005G213200.1 pacid=42803175 polypeptide=Potri.005G213200.1.p locus=Potri.005G213200 ID=Potri.005G213200.1.v4.1 annot-version=v4.1 MESSNLKEAEGAMKGKKSNTHQEAETASTAKEKKLGSKEGSVSNKELYFRADKIDFKSWDIQLENHLSRAWSRDREVQPTRKEEWEIDLGKLDIRHVISY GTYGTVYRGNYDGQDVAVKVLDWGEDGIATAAETAALRASFKQEVAVWHKLDHPNVTKFVGASMGTSNLKIPSKSSSSDSVNSPPARACCVVVEYLPGGT LKKFLIRNRRKKLAFKIVIQLALDLSRGLSYLHSKKIVHRDVKTENMLLDATRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVY SFGICLWETYCCDMPYPDLSFAEVSSAVVRQHLRPEIPRCCPSSLASVMRKCWDANSEKRPEMDEVVRLLEAIDTSKGGGMLPEDQSTGCLCFTPARGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22750			Protein kinase superfamily pro...		Potri.005G213200 [exp]	0	1
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	2.44	0.8991
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	4.24	0.8988	Pt-RSH2.3
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	4.47	0.9155
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.006G203200 [exp]	6.92	0.8847
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	7.48	0.8986	Pt-NAC2.1,NAC049
AT3G54000			unknown protein		Potri.006G093000 [exp]	8.83	0.8840
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.005G040600 [exp]	9.94	0.8852
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.014G025200 [exp]	11.22	0.8881	DREB36,DREB1.2
AT3G19910			RING/U-box superfamily protein...		Potri.007G073200 [exp]	13.41	0.8636
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	13.85	0.8904	PDS1.2

Compare expression of checked genes

Potri.005G213200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.