Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MCCA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03090 1098 / 0 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT5G35360 425 / 7e-141 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G36160 222 / 2e-60 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 213 / 3e-57 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G29900 49 / 2e-05 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078200 [exp] 436 / 2e-145 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.018G146300 [exp] 427 / 4e-142 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G169100 [exp] 219 / 2e-59 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 216 / 3e-58 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.010G023100 [exp] 47 / 7e-05 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1) Potri.017G092500 [exp] 43 / 0.0007 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042623 [exp] 1163 / 0 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10022077 [exp] 655 / 0 AT1G03090 606 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10022078 [exp] 446 / 5e-153 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10028196 [exp] 429 / 5e-142 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017534 [exp] 424 / 2e-140 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 417 / 2e-132 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 380 / 1e-123 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042901 [exp] 246 / 1e-73 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10006934 [exp] 208 / 1e-55 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024748 [exp] 206 / 3e-55 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0483 [poplar] [flax] PreATP-grasp PF00289 [poplar] [flax] Biotin_carb_N Biotin carboxylase, N-terminal domain CL0105 [poplar] [flax] Hybrid PF00364 [poplar] [flax] Biotin_lipoyl Biotin-requiring enzyme CL0105 [poplar] [flax] Hybrid PF02785 [poplar] [flax] Biotin_carb_C Biotin carboxylase C-terminal domain CL0179 [poplar] [flax] ATP-grasp PF13535 [poplar] [flax] ATP-grasp_4 ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.005G213300.5 pacid=42804417 polypeptide=Potri.005G213300.5.p locus=Potri.005G213300 ID=Potri.005G213300.5.v4.1 annot-version=v4.1 ATGGCGTCAATGGCAACCATCCTCCGTCGAAAACTCCACGACAACAGACATTTCCTTATCCAAACACGACTCTTCTCCCTCGAATCTTTCTCTCATGACA CCAAAACTACATCGCGCATAGAGAAAATATTGATTGCAAACAGAGGCGAAATAGCTTGCAGGATCATGCGGACCGCGAAACGCCTAGGGATTCGAACCGT CGCGGTTTACAGTGACGCGGATAGAGACTCGCTCCACGTGAAATCGGCTGACGAGGCTGTCCATATCGGTCCGCCTCCGGCTCGGTTGAGTTATTTGAAT GGCTCGGCGATTGTCGAGGCCGCGATTCGTACTGGTGCACAGGCTATTCACCCGGGTTATGGTTTCTTATCCGAGAGTTCTGATTTCGCTACACTATGTG AAGACAAAGGTCTGACTTTTGTCGGACCACCAGCATCGGCAATCCGGGACATGGGTGATAAAAGTGCATCAAAGAGGATAATGGGTGCAGCAGGGGTGCC GCTTGTGCCAGGTTATCATGGCAGTGAACAAGATATTGAACTTATGAAGTCAGAAGCAGATAAGATTGGATACCCTATCTTAATAAAGCCGACGCATGGA GGTGGTGGAAAGGGTATGAGGATAGTTCAAAGTCCAAATGAATTTGTTGACTCTTTTTTGGGAGCACAACGTGAAGCAGCTGCTTCATTTGGTATAAACA CAATTCTGCTAGAGAAATATATCACAAAGCCAAGACACATAGAAGTTCAGATATTTGGGGACAAACATGGCAATGTACTACATTTATATGAAAGGGACTG CAGCGTACAGAGAAGACATCAGAAGATAATTGAAGAAGCTCCAGCTCCAAATGTCATGAATGACTTCCGCTCCCACTTGGGCCAGGCTGCTGTATCTGCA GCCAAGGCAGTTGGTTACCACAATGCTGGCACTGTGGAGTTTATAGTTGACACTGTGTCAGGCCAGTTCTATTTCATGGAGATGAACACCCGCCTTCAGG TTGAGCATCCTGTGACTGAGATGATTGTTGGCCAAGATCTTGTAGAGTGGCAAATATCTGTTGCAAATGGAGAGCCACTACCTATTAATCAGTCACAGGT GCCTTTATTGGGGCATGCCTTTGAAGCCCGAATATATGCTGAAAATGTTCCAAAAGGATTTCTTCCTGCAACTGGAGTTCTTCACCATTATCGTCCCGTT CCAGTTTCACCAACAGTTCGGGTTGAGACTGGAGTTGAGCAGGGGGATACTGTTAGCATGCACTACGATCCAATGATTGCAAAGCTTGTTGTCTCAGGAG AAAACCGTGCTGCAGCATTAGTCAAACTGAAGGATTGCTTATCAAAATTTCAGGTTGCAGGTGTGCCAACTAATATCAATTTTCTTCAAAAACTTGCTGA CCATAGAGCATTTGAAAATGGCAATGTGGAGACCCACTTTATTGAACATTATAAAGATGACCTCTTTACTGATCCTAACAATTTAACGCGTGCAAAGGAA ACATATGATAATGCTAGATTCAGCGCAACCCTGGTAGCTGCATGTCTTTGTGAGAAGGAGCATTCTGCTATAAAGTCCAGTCTCCCTGGGACCAATGGGT TACTCCCCATATGGTATTCTCATCCCCCTTTTCGAGCCCATTATCAAGCTAGTTGTACCATGGAGCTTGAGTGGGAGAATGAATATGATGGAAGCAGCTC CGAATTTTTTACCTTCTCCATCACTTATCAGTCAGATGGGAACTATCTTATTGAGACAGAAGAAGTCAATTCCCCTGGTTTGGAAGTCAAGGCAACACTC CTGCACGACCAAGATTTTAGAGTTGAAACTGATGGTGTGAGCATGGATGTTAGTTTATCTGCATATTCCAAGGACAAAATAAAGCACATTCATTTATGGC ATGGATCACATCATTATCATTTCAGACAAAAGTTAGAGCTTGACTTGTCTGATGATAATGAAATACAACAGAAGACCAATTTTGAGACTGCATTGCACCC TCCAGGAACTGTGGTGGCTCCCATGGCTGGTTTAGTAGTCAAGGTTCTGGTGATGGATGGAACAAAGGTAGAAGAAGGGCAGCCTATATTAGTACTCGAA GCAATGAAGATGGAGCATGTTGTGAAGGCTCCATTTAGTGGGCATGTTCATGGGCTTCAAGTGACAGCTGGCCAACAGGTTTCTGATAGCAGTCCCCTCT TCAGTGTCAAGTTTCCTGGCTCATACTCTGCGACTCGCTGCTCTATTCACCATGAAAGCTAG
AA sequence Show only first row Show all	>Potri.005G213300.5 pacid=42804417 polypeptide=Potri.005G213300.5.p locus=Potri.005G213300 ID=Potri.005G213300.5.v4.1 annot-version=v4.1 MASMATILRRKLHDNRHFLIQTRLFSLESFSHDTKTTSRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAVHIGPPPARLSYLN GSAIVEAAIRTGAQAIHPGYGFLSESSDFATLCEDKGLTFVGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGSEQDIELMKSEADKIGYPILIKPTHG GGGKGMRIVQSPNEFVDSFLGAQREAAASFGINTILLEKYITKPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNVMNDFRSHLGQAAVSA AKAVGYHNAGTVEFIVDTVSGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQISVANGEPLPINQSQVPLLGHAFEARIYAENVPKGFLPATGVLHHYRPV PVSPTVRVETGVEQGDTVSMHYDPMIAKLVVSGENRAAALVKLKDCLSKFQVAGVPTNINFLQKLADHRAFENGNVETHFIEHYKDDLFTDPNNLTRAKE TYDNARFSATLVAACLCEKEHSAIKSSLPGTNGLLPIWYSHPPFRAHYQASCTMELEWENEYDGSSSEFFTFSITYQSDGNYLIETEEVNSPGLEVKATL LHDQDFRVETDGVSMDVSLSAYSKDKIKHIHLWHGSHHYHFRQKLELDLSDDNEIQQKTNFETALHPPGTVVAPMAGLVVKVLVMDGTKVEEGQPILVLE AMKMEHVVKAPFSGHVHGLQVTAGQQVSDSSPLFSVKFPGSYSATRCSIHHES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Potri.005G213300 [exp]	0	1	MCCA.1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Potri.001G043100 [exp]	9.38	0.9087	J8.1
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Potri.015G087700 [exp]	26.72	0.9029
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.003G022650 [exp]	32.55	0.8600
AT1G68190	CO		B-box zinc finger family prote...		Potri.008G125200 [exp]	50.73	0.8606
AT3G14470			NB-ARC domain-containing disea...		Potri.006G272066 [exp]	65.86	0.8860
AT5G02930			F-box/RNI-like superfamily pro...		Potri.005G252701 [exp]	71.35	0.8662
					Potri.006G271586 [exp]	75.39	0.8831
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Potri.010G141400 [exp]	76.68	0.8309	Pt-BXL1.2
AT3G03080			Zinc-binding dehydrogenase fam...		Potri.017G002500 [exp]	83.94	0.8829
AT1G54070			Dormancy/auxin associated fami...		Potri.001G164800 [exp]	91.88	0.8753

Compare expression of checked genes

Potri.005G213300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.